Hi,
I need your help with mpiblast.
When I run:
[EMAIL PROTECTED]:/mirror/wolf/db$ mpirun.mpich -np 5 /mirror/wolf/mpiblast-1.4.0/src/mpiblast -d nr -i /mirror/wolf/db/p53.fasta -p blastp
I have.... a lot of...
[blastall] ERROR: gi|4506387|ref|NP_002865.1|: BlastKarlinBlkGappedCalc: ®Û is not a supported matrix
[blastall] ERROR: gi|4506387|ref|NP_002865.1|: BlastKarlinBlkGappedCalc: BLOSUM80 is a supported matrix
[blastall] ERROR: gi|4506387|ref|NP_002865.1|: BlastKarlinBlkGappedCalc: BLOSUM62 is a supported matrix
My .ncbirc file:
[EMAIL PROTECTED]:/mirror/wolf/db$ cat /home/beowulf/.ncbirc
[NCBI]
Data="">
[BLAST]
BLASTDB=/mirror/wolf/ncbi/ncbi
BLASTMAT=/mirror/wolf/ncbi/ncbi/data
[mpiBLAST]
Shared=/mirror/wolf/db
Local=/mirror/wolf/db
[EMAIL PROTECTED]:/mirror/wolf/db$
Thank you !!!!
Kaminski
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