Hi Andre, I'm unsure why you're getting that error. Does blastall give the same error message? Considering that your computer's first language may be Portuguese, I wonder if the .ncbirc file is in UTF-8/ASCII format or whether it's in 16-bit unicode? I would be very surprised if the NCBI toolbox can read unicode. Perhaps it would be possible to check the .ncbirc with a hex editor?
If that doesn't help, try deleting the BLASTMAT line in the configuration file... -Aaron Andre Kaminski wrote: > > Hi, > > I need your help with mpiblast. > > When I run: > > /[EMAIL PROTECTED]:/mirror/wolf/db$/ > <mailto:[EMAIL PROTECTED]:/mirror/wolf/db$>/ mpirun.mpich -np 5 > /mirror/wolf/mpiblast-1.4.0/src/mpiblast -d nr -i > /mirror/wolf/db/p53.fasta -p blastp > / > > I have.... a lot of... > > /[blastall] ERROR: gi|4506387|ref|NP_002865.1|: > BlastKarlinBlkGappedCalc: ®Û is not a supported matrix > [blastall] ERROR: gi|4506387|ref|NP_002865.1|: > BlastKarlinBlkGappedCalc: BLOSUM80 is a supported matrix > [blastall] ERROR: gi|4506387|ref|NP_002865.1|: > BlastKarlinBlkGappedCalc: BLOSUM62 is a supported matrix/ > > My .ncbirc file: > > /[EMAIL PROTECTED]:/mirror/wolf/db$/ > <mailto:[EMAIL PROTECTED]:/mirror/wolf/db$>/ cat /home/beowulf/.ncbirc > [NCBI] > Data=/mirror/wolf/ncbi/ncbi/data/ > > /[BLAST] > BLASTDB=/mirror/wolf/ncbi/ncbi > BLASTMAT=/mirror/wolf/ncbi/ncbi/data/ > > /[mpiBLAST] > Shared=/mirror/wolf/db > Local=/mirror/wolf/db > //[EMAIL PROTECTED]:/mirror/wolf/db$/ <mailto:[EMAIL > PROTECTED]:/mirror/wolf/db$> > > Thank you !!!! > > > Kaminski > > ------------------------------------------------------------------------ > > ------------------------------------------------------------------------- > Using Tomcat but need to do more? Need to support web services, security? > Get stuff done quickly with pre-integrated technology to make your job easier > Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo > http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 > ------------------------------------------------------------------------ > > _______________________________________________ > Mpiblast-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/mpiblast-users > ------------------------------------------------------------------------- Using Tomcat but need to do more? Need to support web services, security? Get stuff done quickly with pre-integrated technology to make your job easier Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 _______________________________________________ Mpiblast-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/mpiblast-users
