I'm not going to try and debug this issue in Sage. From my perspective this could equally well be:
1) An issue in the Sage environment 2) A bug in Pari 3) A bug in gcc 4) A bug in MPIR At the present moment I have tonsilitis and I am working very hard on my FLINT project in anticipation of visiting Andy Novocin next week to optimise his new factorisation code that he has written for FLINT. So I just don't have time to debug all of the above. Sorry. I will chip in with bits and pieces here and there when I can, and certainly I will be interested if it is shown conclusively to be an issue in MPIR. But so far everything works fine for me between Pari and MPIR on the machine in question. (I'm pretty sure you'll get the same response if you report this as a bug to the gcc developers.) I hope Jason and you might be able to get somewhere with it though. Bill. 2009/11/15 William Stein <[email protected]>: > > On Sun, Nov 15, 2009 at 8:41 AM, Bill Hart <[email protected]> > wrote: >> >> 2009/11/15 Jason Moxham <[email protected]>: >>> >>> >>> This issue has bought up a number of things that need to sorted. >>> >>> Sage shouldn't use LD_LIBRARY_PATH to get pari to recognise readline , but >>> use >>> ./Configure -with-readline etc , sage may have to use this method for other >>> packages though? >> >> Agreed. Although I didn't know it was doing this incorrectly in the first >> place. > > Just look at the spkg-install script in the pari spkg: > > ./Configure $PARI_EXTRA_OPTS --prefix=$SAGE_LOCAL > --with-readline=$SAGE_LOCAL --with-gmp=$SAGE_LOCAL --kernel=gmp > --graphic=none > > It's been doing the "right thing" all along. > >> >>> >>> mpir-1.2 32bit fat should work with gcc , the non-fat versions work , and >>> 64bit fat versions works , and apparently some 32bit fat versions also work >>> , >>> so its not version numbers or missing symbols. Perhaps debians gcc was built >>> with a debian patched gmp which we have no "knowledge" of , although I would >>> of thought that it should break in all cases not just with fat. >> >> Right, it probably should work, weird mallocs, nails or some other >> funnys aside (though apparently Sage works just fine with gmp 4.3.1. >> So the number of possibilities here is limited. > > apparently = definitely. > >> Also, if I could actually replicate the issue I could look into the >> cause. As it is, I still haven't seen the issue occur. >> >> I've tried: >> >> 1) Building Pari against a fat binary mpir 1.3.0 on a 32 bit system >> 2) Building Pari against a fat binary mpir 1.2.1 on debian32 >> 3) Changing the compiler optimisation level to -O1 when building Pari >> against a fat binary mpir-1.2.1 on debian32 >> 4) Changed the LD_LIBRARY_PATH to /home/wbhart/mpir-1.2.1/.libs and >> changing the compiler optimisation level to -O1 when building Pari >> against a fat binary mpir-1.2.1 on debian32. >> 5) Checking whether gcc or cpp are dynamically linked against GMP or >> MPIR in the first place - they are not. >> >> So far I cannot reproduce the issue. > > You could replicate the exact issue by building Sage-4.2.1 with > SAGE_FAT_BINARY="yes". Seeing it with your own eyes might be valuable: > > http://sage.math.washington.edu/home/wstein/farm/src/sage-4.2.1.tar > >> How does Pari know where to find libm? That is surely not built by >> Sage. But presumably Pari would not build at all if it couldn't find >> it. >> >> Another possibility is that some symbol we are leaking conflicts with >> a libm symbol.... >> >> Dunno. >> >> Bill. >> >>> >>> As far I can tell , the library versioning system does not allow for >>> compatible librarys , so there is no solution to this . ie updating the >>> soname numbers to reflect how mpir changes breaks the gmp soname numbers >>> and >>> the other way around as well. >>> >>> >>> On Sunday 15 November 2009 15:45:19 Bill Hart wrote: >>>> The version we use for MPIR 1.3.0 *is* 8.0.0. So that shouldn't even >>>> work with gcc. It should require 7.x.y and since we have 8.0.0 that >>>> means we don't implement the interface for 7.x.y. The linker should >>>> complain. GMP 4.3.1 however would work, as it claims to implement the >>>> previous interface. >>>> >>>> So at least this problem won't occur with the latest version of MPIR. >>>> >>>> Bill. >>>> >>>> 2009/11/15 Bill Hart <[email protected]>: >>>> > Here are the library numbers for GMP 4.2.1 and 4.2.2: >>>> > >>>> > GMP libgmp libgmpxx libmp >>>> > 4.2.1 7:1:4 4:1:1 4:10:1 >>>> > 4.2.2 7:2:4 4:2:0 4:11:1 >>>> > >>>> > What this signifies is that there were no interface changes for >>>> > libgmp, libgmpxx or libmp. >>>> > >>>> > For GMP 4.2.2 the age is back to 0. The age signifies the number of >>>> > previous revisions of the interface this library supports. By changing >>>> > it to 1, this signifies that libgmpxx supports intefaces 3 and 4 of >>>> > libgmpxx. I think that was incorrect and fixed for GMP 4.2.2. >>>> > >>>> > Now debian gcc 4.3.2-2 ultimately requires gmp 4.2.2 (why not 4.2.1 I >>>> > don't know - possibly because libmpfr had some changes which depended >>>> > on bug fixes in gmp 4.2.2). Anyhow, for mpir 1.2.1 we set the numbers >>>> > as: >>>> > >>>> > MPIR libgmp libgmpxx libmp >>>> > 1.2.1 7:5:4 4:5:1 4:14:1 >>>> > >>>> > which basically signifies that the interface should be the same as for >>>> > GMP 4.2.1 and 4.2.2. So in fact, it we say it should work with gcc. >>>> > Also I'm unaware of any interface changes we made for MPIR 1.2.1 over >>>> > GMP 4.2.1. except removal of the ternary operators in gmpxx.h. I do >>>> > recall some corrections to return values of some functions, which were >>>> > wrong. But I seem to recall that was a documentation issue only. >>>> > >>>> > Anyhow, one issue we have is that we did not set the age of libgmpxx >>>> > back to 0, so we are still certifying we are compatible with interface >>>> > 3 of libgmpxx, which is apparently not true. >>>> > >>>> > Now for MPIR 1.3.0 the numbers should be set to something like: >>>> > >>>> > MPIR libgmp libgmpxx libmp >>>> > 1.3.0 8:0:0 4:6:1 4:16:1 >>>> > >>>> > I think it is ok that we removed the ternary operators from gmpxx.h >>>> > because these are only found in gmpxx.h not in the binary itself. So >>>> > that does not require a change of interface number (and it also >>>> > follows GMP's lead on that issue). >>>> > >>>> > We've also removed old deprecated functions from libgmp. Thus the >>>> > 8:0:0. There was actually an MPIR 1.2.2 which never got posted to the >>>> > website, it had a libmp version of 4:15:1, hence the 4:16:2 for MPIR >>>> > 1.3.0. >>>> > >>>> > Now subsequent GMP versions have had the following numbers: >>>> > >>>> > 4.2.3 7:3:4 4:3:0 4:12:1 >>>> > 4.2.4 7:4:4 4:4:0 4:13:1 >>>> > 4.3.0 8:0:5 5:0:1 4:14:1 >>>> > 4.3.1 8:1:5 5:1:1 4:15:1 >>>> > >>>> > Note the interface change for libgmp to 8:0:5 for GMP 4.3.0. But no >>>> > removed interfaces means they can bump the age to 5 instead of 0 as >>>> > they are backwards compatible all the way back to GMP 3. >>>> > >>>> > Anyhow, if we change our version to 8:0:0 for MPIR 1.3.0, then >>>> > basically we are saying we fully implement the GMP interface for GMP >>>> > 4.3.0 but none of the previous interfaces, which is not true. >>>> > >>>> > Essentially there is nothing we can do to get this right. Essentially, >>>> > if we want the version numbers to mean anything, we'll have to wait >>>> > until GMP removes some interfaces and sets their age to 0 before >>>> > removing any deprecated functions. Also, until we fully implement the >>>> > additional interfaces in GMP 4.3.0 we should not update our interface >>>> > number to 8. >>>> > >>>> > I'm unsure what the new interfaces are, but probably the extgcd >>>> > functions operate differently, with different normalisation. There >>>> > might also be some new documented functions. We should compare the >>>> > manuals. I think there were some changes to some of the division >>>> > functions. >>>> > >>>> > Bill. >>>> > >>>> > 2009/11/15 Bill Hart <[email protected]>: >>>> >> This whole thread raises a question for MPIR 1.3.0. Are we still >>>> >> binary interface compatible with GMP 4.2.1 given that we have removed >>>> >> those deprecated functions? If not, then we ought to bump our soname >>>> >> version numbers accordingly. But how to do this. If we bump them, then >>>> >> we are essentially saying we are binary compatible with the next >>>> >> version of GMP that changes the interface. That wouldn't likely be >>>> >> correct. >>>> >> >>>> >> Bill. >>>> >> >>>> >> 2009/11/15 Bill Hart <[email protected]>: >>>> >>> Actually it is the C preprocessor which depends on GMP, but again, it >>>> >>> doesn't dynamically link with GMP on debian5-32 any more: >>>> >>> >>>> >>> wbh...@debian5-32:~$ldd /usr/bin/cpp >>>> >>> linux-gate.so.1 => (0xb7fa5000) >>>> >>> libc.so.6 => /lib/i686/cmov/libc.so.6 (0xb7e3b000) >>>> >>> /lib/ld-linux.so.2 (0xb7fa6000) >>>> >>> >>>> >>> Bill. >>>> >>> >>>> >>> 2009/11/15 Bill Hart <[email protected]>: >>>> >>>> OK, problem seems to have gone on debian5-32: >>>> >>>> >>>> >>>> ldd /usr/bin/gcc >>>> >>>> linux-gate.so.1 => (0xb7f44000) >>>> >>>> libc.so.6 => /lib/i686/cmov/libc.so.6 (0xb7dda000) >>>> >>>> /lib/ld-linux.so.2 (0xb7f45000) >>>> >>>> >>>> >>>> So I can't try any of the above. Looks like someone just statically >>>> >>>> linked gcc against GMP. And Pari now compiles just fine with >>>> >>>> LD_LIBRARY_PATH set to the mpir/.libs directory. >>>> >>>> >>>> >>>> That will fix the problem with regard to building sage binaries >>>> >>>> anyhow. >>>> >>>> >>>> >>>> Bill. >>>> >>>> >>>> >>>> 2009/11/15 Bill Hart <[email protected]>: >>>> >>>>> A more robust solution is to create a little wrapper script for gcc >>>> >>>>> which sets LD_LIBRARY_PATH to the system library path (the original >>>> >>>>> LD_LIBRARY_PATH before the Sage environment was set). This is >>>> >>>>> actually the accredited technique for complex situations (such as the >>>> >>>>> one we have). >>>> >>>>> >>>> >>>>> http://www.linux.org/docs/ldp/howto/Program-Library-HOWTO/shared-libr >>>> >>>>>aries.html >>>> >>>>> >>>> >>>>> Bill. >>>> >>>>> >>>> >>>>> 2009/11/15 Bill Hart <[email protected]>: >>>> >>>>>> Although it doesn't fix the cython issue, one solution for Pari >>>> >>>>>> would be to statically link against MPIR. However it isn't a proper >>>> >>>>>> fix because there is every chance that a similar bug could be hit >>>> >>>>>> building any of the Sage spkg's. Statically linking MPIR against all >>>> >>>>>> of them would bloat the binary size, I believe. >>>> >>>>>> >>>> >>>>>> Bill. >>>> >>>>>> >>>> >>>>>> 2009/11/15 Bill Hart <[email protected]>: >>>> >>>>>>> I'm probably missing something important here, but why set >>>> >>>>>>> LD_LIBRARY_PATH to the sage environment for either Configure or >>>> >>>>>>> make, when building Pari? >>>> >>>>>>> >>>> >>>>>>> The correct way to tell Pari which readline and gmp to link against >>>> >>>>>>> is --with-gmp=.... and --with-readline=..... >>>> >>>>>>> >>>> >>>>>>> LD_LIBRARY_PATH should only be changed at runtime. >>>> >>>>>>> >>>> >>>>>>> Of course make check probably both compiles the test suite and >>>> >>>>>>> executes it, which requires LD_LIBRARY_PATH set two different ways >>>> >>>>>>> at the same time. >>>> >>>>>>> >>>> >>>>>>> There is also a potential issue with Cython (I didn't check how >>>> >>>>>>> Cython calls the compiler). It wants to run the C compiler at Sage >>>> >>>>>>> runtime. That's also potentially messed up if someone writes some >>>> >>>>>>> cython code which does constant folding. >>>> >>>>>>> >>>> >>>>>>> Really and truly, the gcc should not be dynamically linked against >>>> >>>>>>> gmp, but statically linked. Under normal circumstances it is not a >>>> >>>>>>> problem because the user simply adds the Sage local libs directory >>>> >>>>>>> to LD_LIBRARY_PATH, leaving the system library path in there. Here >>>> >>>>>>> we don't want to do that because we are providing our own version >>>> >>>>>>> of "GMP". >>>> >>>>>>> >>>> >>>>>>> Basically there is no right way of dealing with an issue like this. >>>> >>>>>>> If you fork a library that gcc uses then dynamically link gcc >>>> >>>>>>> against that library, it's broken. >>>> >>>>>>> >>>> >>>>>>> Bill. >>>> >>>>>>> >>>> >>>>>>> 2009/11/15 Jason Moxham <[email protected]>: >>>> >>>>>>>> On Sunday 15 November 2009 02:24:47 William Stein wrote: >>>> >>>>>>>>> On Sat, Nov 14, 2009 at 6:17 PM, Jason Moxham >>>> >>>>>>>>> <[email protected]> >>>> >>>>>>>> >>>> >>>>>>>> wrote: >>>> >>>>>>>>> > Of course , that is the error >>>> >>>>>>>>> > LD_LIBRARY_PATH sets the path for executables so there is no >>>> >>>>>>>>> > need for it to be set when building pari (just when running it) >>>> >>>>>>>>> > so the only thing that is USING libgmp is gcc which doesn't >>>> >>>>>>>>> > like it . >>>> >>>>>>>>> >>>> >>>>>>>>> This means that a temporary workaround is that in the >>>> >>>>>>>>> spkg-install script for PARI we put: >>>> >>>>>>>>> >>>> >>>>>>>>> echo "Building and install PARI" >>>> >>>>>>>>> TMP=LD_LIBRARY_PATH; unset LD_LIBRARY_PATH >>>> >>>>>>>>> if [ "$UNAME" = "CYGWIN" ]; then >>>> >>>>>>>>> # There are weird bugs in PARI's build process on Windows >>>> >>>>>>>>> XP # under Cygwin. >>>> >>>>>>>>> # Passing in this extra flag gets around the bug. >>>> >>>>>>>>> $MAKE GMPINCLUDE=-I$SAGE_LOCAL/include >>>> >>>>>>>>> EXTRADLLDFLAGS=-lgmp gp else >>>> >>>>>>>>> $MAKE gp >>>> >>>>>>>>> fi >>>> >>>>>>>>> LD_LIBRARY_PATH=$TMP >>>> >>>>>>>> >>>> >>>>>>>> I think pari wont use readline if we do this , but I dont think >>>> >>>>>>>> sage uses pari like that ? so it should be OK >>>> >>>>>>>> >>>> >>>>>>>>> Of course, I'm curious why a FAT mpir crashes GCC... >>>> >>>>>>>> >>>> >>>>>>>> Yeah , weird , just seems to be debian 4.3.2 that does it , NOTE: >>>> >>>>>>>> gcc-4.3.2 also buggers up some other packages eg gmp-4.3.x , so it >>>> >>>>>>>> may not be worth the effort trying to fix it. >>>> >>>>>>>> >>>> >>>>>>>>> I can't work on this now, unfortunately, since the latency of my >>>> >>>>>>>>> net connection at this hotel is horrendous. >>>> >>>>>>>>> >>>> >>>>>>>>> William >>>> >>>>>>>>> >>>> >>>>>>>>> > On Sunday 15 November 2009 02:06:25 Jason Moxham wrote: >>>> >>>>>>>>> >> this is with mpir-1.2 ,and I think we have only start to >>>> >>>>>>>>> >> remove them in 1.3 >>>> >>>>>>>>> >> >>>> >>>>>>>>> >> I mean pari builds fine with our fat enabled mpir , but only >>>> >>>>>>>>> >> if LD_LIBRARY_PATH does NOT point to our libmpir >>>> >>>>>>>>> >> >>>> >>>>>>>>> >> LD_LIBRARY_PATH is not used until linking time ? so it should >>>> >>>>>>>>> >> have no effect on the compile . >>>> >>>>>>>>> >> If gcc is using our libmpir internally , which it should not , >>>> >>>>>>>>> >> then gcc may require libgmp to built with certain options , >>>> >>>>>>>>> >> some sort of specific malloc etc >>>> >>>>>>>>> >> >>>> >>>>>>>>> >> On Sunday 15 November 2009 01:50:52 Bill Hart wrote: >>>> >>>>>>>>> >> > Heh! I don't suppose gcc would be using old deprecated >>>> >>>>>>>>> >> > functions which we've removed. :-) >>>> >>>>>>>>> >> > >>>> >>>>>>>>> >> > Bill. >>>> >>>>>>>>> >> > >>>> >>>>>>>>> >> > 2009/11/15 Bill Hart <[email protected]>: >>>> >>>>>>>>> >> > > That seems like a likely possibility, in which case one >>>> >>>>>>>>> >> > > presumes there is a symbol which GMP provides and we >>>> >>>>>>>>> >> > > don't, or at least our interface is different. >>>> >>>>>>>>> >> > > >>>> >>>>>>>>> >> > > I think gcc only uses GMP for constant folding though, and >>>> >>>>>>>>> >> > > the line in question didn't involve any constants did it? >>>> >>>>>>>>> >> > > >>>> >>>>>>>>> >> > > I wonder how one even debugs something like this. I >>>> >>>>>>>>> >> > > suppose you could valgrind gcc while compiling that one >>>> >>>>>>>>> >> > > file? >>>> >>>>>>>>> >> > > >>>> >>>>>>>>> >> > > Bill. >>>> >>>>>>>>> >> > > >>>> >>>>>>>>> >> > > 2009/11/15 Jason Moxham <[email protected]>: >>>> >>>>>>>>> >> > >> export >>>> >>>>>>>>> >> > >> LD_LIBRARY_PATH=/tmp/jason/sage-4.2.1/local/lib/R/lib:/tm >>>> >>>>>>>>> >> > >>p/jason/sa ge- 4. >>>> >>>>>>>>> >> > >> 2.1/local/lib/openmpi:/tmp/jason/sage-4.2.1/local/lib/: >>>> >>>>>>>>> >> > >> >>>> >>>>>>>>> >> > >> like the sage shell does and then we get the same error >>>> >>>>>>>>> >> > >> >>>> >>>>>>>>> >> > >> So I deleted all files in .../local/lib/ except libgmp* >>>> >>>>>>>>> >> > >> and exported >>>> >>>>>>>>> >> > >> LD_LIBRARY_PATH=/tmp/jason/sage-4.2.1/local/lib/: >>>> >>>>>>>>> >> > >> >>>> >>>>>>>>> >> > >> and we get the error >>>> >>>>>>>>> >> > >> whereas without the export pari builds fine >>>> >>>>>>>>> >> > >> >>>> >>>>>>>>> >> > >> Could the gcc on debian32 be using the gmp in our local >>>> >>>>>>>>> >> > >> path to do its internal optimizations , whereas gcc >>>> >>>>>>>>> >> > >> should use the system gmp >>>> >>>>>>>>> >> > >> >>>> >>>>>>>>> >> > >> On Sunday 15 November 2009 00:24:25 Jason Moxham wrote: >>>> >>>>>>>>> >> > >>> It appears to be the actual environment that sage >>>> >>>>>>>>> >> > >>> provides in its "sage subshell" >>>> >>>>>>>>> >> > >>> >>>> >>>>>>>>> >> > >>> >>>> >>>>>>>>> >> > >>> ie >>>> >>>>>>>>> >> > >>> >>>> >>>>>>>>> >> > >>> Building pari in the sage shell >>>> >>>>>>>>> >> > >>> >>>> >>>>>>>>> >> > >>> sage subshell$ ./Configure --graphic=none >>>> >>>>>>>>> >> > >>> --prefix=/tmp/jason/sage-4.2.1/local >>>> >>>>>>>>> >> > >>> --with-readline=/tmp/jason/sage-4.2.1/local --with- >>>> >>>>>>>>> >> > >>> gmp=/tmp/jason/sage-4.2.1/local --kernel=gmp >>>> >>>>>>>>> >> > >>> --graphic=none && make gp Configuring pari-2.3.3 >>>> >>>>>>>>> >> > >>> (STABLE) >>>> >>>>>>>>> >> > >>> Checking echo to see how to suppress newlines... >>>> >>>>>>>>> >> > >>> ...using -n. >>>> >>>>>>>>> >> > >>> Looking for some tools first ... >>>> >>>>>>>>> >> > >>> ...ld is /usr/bin/ld >>>> >>>>>>>>> >> > >>> ...zcat is /bin/zcat >>>> >>>>>>>>> >> > >>> ...gzip is /bin/gzip >>>> >>>>>>>>> >> > >>> ...ranlib is /usr/bin/ranlib >>>> >>>>>>>>> >> > >>> ...perl is /usr/bin/perl >>>> >>>>>>>>> >> > >>> ...emacs is /usr/bin/emacs >>>> >>>>>>>>> >> > >>> GNU compiler version 4.3.2 (Debian 4.3.2-1.1) >>>> >>>>>>>>> >> > >>> Given the previous choices, sizeof(long) is 4 chars. >>>> >>>>>>>>> >> > >>> The internal word representation of a double is l[1], >>>> >>>>>>>>> >> > >>> l[0]. >>>> >>>>>>>>> >> > >>> ======================================================== >>>> >>>>>>>>> >> > >>>========== === == === Building for architecture: i686 >>>> >>>>>>>>> >> > >>> running linux (ix86/GMP kernel) 32-bit version >>>> >>>>>>>>> >> > >>> ======================================================== >>>> >>>>>>>>> >> > >>>========== === == === C compiler is gcc -O1 >>>> >>>>>>>>> >> > >>> -Wall >>>> >>>>>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer Executable >>>> >>>>>>>>> >> > >>> linker is ld --export-dynamic Dynamic Lib linker is >>>> >>>>>>>>> >> > >>> gcc -shared $(CFLAGS) $(DLCFLAGS) -Wl,-shared,- >>>> >>>>>>>>> >> > >>> soname=$(LIBPARI_SONAME) Looking in C lib for some >>>> >>>>>>>>> >> > >>> symbols... >>>> >>>>>>>>> >> > >>> ...I did not find exp2. >>>> >>>>>>>>> >> > >>> ...I did not find log2. >>>> >>>>>>>>> >> > >>> ...Found strftime. >>>> >>>>>>>>> >> > >>> ...Found getrusage. >>>> >>>>>>>>> >> > >>> ...Found sigaction. >>>> >>>>>>>>> >> > >>> ...Found TIOCGWINSZ. >>>> >>>>>>>>> >> > >>> ...Found getrlimit. >>>> >>>>>>>>> >> > >>> ...Found stat. >>>> >>>>>>>>> >> > >>> ...Found vsnprintf. >>>> >>>>>>>>> >> > >>> ...I did not find dlopen. >>>> >>>>>>>>> >> > >>> Try again, with -ldl this time... >>>> >>>>>>>>> >> > >>> ...Found dlopen. >>>> >>>>>>>>> >> > >>> Checking for optional libraries and headers... >>>> >>>>>>>>> >> > >>> ...Found libgmp in /tmp/jason/sage-4.2.1/local/lib >>>> >>>>>>>>> >> > >>> ...Found gmp header in >>>> >>>>>>>>> >> > >>> /tmp/jason/sage-4.2.1/local/include Using GNU MP, >>>> >>>>>>>>> >> > >>> version 4.2.1 >>>> >>>>>>>>> >> > >>> ### >>>> >>>>>>>>> >> > >>> ### libX11.so not found. Please install X11 development >>>> >>>>>>>>> >> > >>> files. ### They usually come in XFree86-devel (RPM) or >>>> >>>>>>>>> >> > >>> xlibs-dev (Debian) packages ### >>>> >>>>>>>>> >> > >>> ### X11 not found >>>> >>>>>>>>> >> > >>> ### FLTK not found. Building without FLTK support >>>> >>>>>>>>> >> > >>> Hi-Res Graphics: none >>>> >>>>>>>>> >> > >>> ...Found libreadline in /tmp/jason/sage-4.2.1/local/lib >>>> >>>>>>>>> >> > >>> ...Found readline header in >>>> >>>>>>>>> >> > >>> /tmp/jason/sage-4.2.1/local/include/readline ...Found >>>> >>>>>>>>> >> > >>> history header in >>>> >>>>>>>>> >> > >>> /tmp/jason/sage-4.2.1/local/include/readline ### ### >>>> >>>>>>>>> >> > >>> libncurses.so not found. Please install ncurses >>>> >>>>>>>>> >> > >>> development files. ### They usually come in >>>> >>>>>>>>> >> > >>> ncurses-devel (RPM) or libncurses-dev (Debian) packages >>>> >>>>>>>>> >> > >>> ### >>>> >>>>>>>>> >> > >>> ...Found libtermcap in /tmp/jason/sage-4.2.1/local/lib/ >>>> >>>>>>>>> >> > >>> ...Library termcap needed by readline >>>> >>>>>>>>> >> > >>> Using GNU readline, version 6.0 >>>> >>>>>>>>> >> > >>> Installation prefix ? [/tmp/jason/sage-4.2.1/local] >>>> >>>>>>>>> >> > >>> ...for architecture-independent files (share-prefix) ? >>>> >>>>>>>>> >> > >>> [/tmp/jason/sage-4.2.1/local/share] >>>> >>>>>>>>> >> > >>> Installation directories for: >>>> >>>>>>>>> >> > >>> ...executables (gp, gphelp) ? >>>> >>>>>>>>> >> > >>> [/tmp/jason/sage-4.2.1/local/bin] ...libraries (libpari) >>>> >>>>>>>>> >> > >>> ? [/tmp/jason/sage-4.2.1/local/lib] ...include files ? >>>> >>>>>>>>> >> > >>> [/tmp/jason/sage-4.2.1/local/include] ...manual pages ? >>>> >>>>>>>>> >> > >>> [/tmp/jason/sage-4.2.1/local/share/man/man1] ...emacs >>>> >>>>>>>>> >> > >>> macros ? >>>> >>>>>>>>> >> > >>> [/tmp/jason/sage-4.2.1/local/share/emacs/site-lisp/pari] >>>> >>>>>>>>> >> > >>> ...other system-dependant data ? >>>> >>>>>>>>> >> > >>> [/tmp/jason/sage-4.2.1/local/lib/pari] ...other >>>> >>>>>>>>> >> > >>> system-independant data ? >>>> >>>>>>>>> >> > >>> [/tmp/jason/sage-4.2.1/local/share/pari] Default is >>>> >>>>>>>>> >> > >>> dynamic executable and shared library >>>> >>>>>>>>> >> > >>> ======================================================== >>>> >>>>>>>>> >> > >>>========== === == === Extracting >>>> >>>>>>>>> >> > >>> examples/Makefile.linux-i686 Extracting >>>> >>>>>>>>> >> > >>> Olinux-i686/Makefile >>>> >>>>>>>>> >> > >>> Extracting Olinux-i686/../Odos/paricfg.h >>>> >>>>>>>>> >> > >>> ./config/paricfgDOS.h.SH: line 3: >>>> >>>>>>>>> >> > >>> Olinux-i686/../Odos/paricfg.h: No such file or directory >>>> >>>>>>>>> >> > >>> Extracting Olinux-i686/paricfg.h >>>> >>>>>>>>> >> > >>> Extracting Makefile >>>> >>>>>>>>> >> > >>> Extracting scripts and macros >>>> >>>>>>>>> >> > >>> ...in doc >>>> >>>>>>>>> >> > >>> ...in emacs >>>> >>>>>>>>> >> > >>> ...in misc >>>> >>>>>>>>> >> > >>> ======================================================== >>>> >>>>>>>>> >> > >>>========== === == === Shall we try to build pari 2.3.3 >>>> >>>>>>>>> >> > >>> (released) now (y/n)? [n] Ok. Type "make install" when >>>> >>>>>>>>> >> > >>> you are ready >>>> >>>>>>>>> >> > >>> Bye ! >>>> >>>>>>>>> >> > >>> Making gp in Olinux-i686 >>>> >>>>>>>>> >> > >>> make[1]: Entering directory >>>> >>>>>>>>> >> > >>> `/tmp/jason/sage-4.2.1/spkg/build/pari-2.3.3.p5/src/Olin >>>> >>>>>>>>> >> > >>>ux-i686' File ../src/funclist not changed. >>>> >>>>>>>>> >> > >>> gcc -c -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers >>>> >>>>>>>>> >> > >>> -I../src/language >>>> >>>>>>>>> >> > >>> -I/tmp/jason/sage-4.2.1/local/include -o gp.o >>>> >>>>>>>>> >> > >>> ../src/gp/gp.c gcc -c -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers >>>> >>>>>>>>> >> > >>> -I../src/language >>>> >>>>>>>>> >> > >>> -I/tmp/jason/sage-4.2.1/local/include -o gp_rl.o >>>> >>>>>>>>> >> > >>> ../src/gp/gp_rl.c gcc -c -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers >>>> >>>>>>>>> >> > >>> -I../src/graph -o plotport.o >>>> >>>>>>>>> >> > >>> ../src/graph/plotport.c ../src/graph/plotport.c: In >>>> >>>>>>>>> >> > >>> function ârectticksâ: >>>> >>>>>>>>> >> > >>> ../src/graph/plotport.c:469: internal compiler error: >>>> >>>>>>>>> >> > >>> Segmentation fault Please submit a full bug report, >>>> >>>>>>>>> >> > >>> with preprocessed source if appropriate. >>>> >>>>>>>>> >> > >>> See <file:///usr/share/doc/gcc-4.3/README.Bugs> for >>>> >>>>>>>>> >> > >>> instructions. make[1]: *** [plotport.o] Error 1 >>>> >>>>>>>>> >> > >>> make[1]: Leaving directory >>>> >>>>>>>>> >> > >>> `/tmp/jason/sage-4.2.1/spkg/build/pari-2.3.3.p5/src/Olin >>>> >>>>>>>>> >> > >>>ux-i686' make: *** [gp] Error 2 >>>> >>>>>>>>> >> > >>> /tmp/jason/sage-4.2.1 >>>> >>>>>>>>> >> > >>> sage subshell$ >>>> >>>>>>>>> >> > >>> >>>> >>>>>>>>> >> > >>> >>>> >>>>>>>>> >> > >>> >>>> >>>>>>>>> >> > >>> And build it in a normal shell >>>> >>>>>>>>> >> > >>> >>>> >>>>>>>>> >> > >>> >>>> >>>>>>>>> >> > >>> jasonmox...@debian5-32:/tmp/jason/sage-4.2.1/spkg/build/ >>>> >>>>>>>>> >> > >>>pari-2.3.3 .p5 /s rc$ ./Configure --graphic=none >>>> >>>>>>>>> >> > >>> --prefix=/tmp/jason/sage-4.2.1/local --with- >>>> >>>>>>>>> >> > >>> readline=/tmp/jason/sage-4.2.1/local >>>> >>>>>>>>> >> > >>> --with-gmp=/tmp/jason/sage-4.2.1/local -- kernel=gmp >>>> >>>>>>>>> >> > >>> --graphic=none && make gp >>>> >>>>>>>>> >> > >>> Configuring pari-2.3.3 (STABLE) >>>> >>>>>>>>> >> > >>> Checking echo to see how to suppress newlines... >>>> >>>>>>>>> >> > >>> ...using -n. >>>> >>>>>>>>> >> > >>> Looking for some tools first ... >>>> >>>>>>>>> >> > >>> ...ld is /usr/bin/ld >>>> >>>>>>>>> >> > >>> ...zcat is /bin/zcat >>>> >>>>>>>>> >> > >>> ...gzip is /bin/gzip >>>> >>>>>>>>> >> > >>> ...ranlib is /usr/bin/ranlib >>>> >>>>>>>>> >> > >>> ...perl is /usr/bin/perl >>>> >>>>>>>>> >> > >>> ...emacs is /usr/bin/emacs >>>> >>>>>>>>> >> > >>> Looking for the compilers ... >>>> >>>>>>>>> >> > >>> ...cc is /usr/bin/cc >>>> >>>>>>>>> >> > >>> ...gcc is /usr/bin/gcc >>>> >>>>>>>>> >> > >>> GNU compiler version 4.3.2 (Debian 4.3.2-1.1) >>>> >>>>>>>>> >> > >>> Given the previous choices, sizeof(long) is 4 chars. >>>> >>>>>>>>> >> > >>> The internal word representation of a double is l[1], >>>> >>>>>>>>> >> > >>> l[0]. >>>> >>>>>>>>> >> > >>> ======================================================== >>>> >>>>>>>>> >> > >>>========== === == === Building for architecture: i686 >>>> >>>>>>>>> >> > >>> running linux (ix86/GMP kernel) 32-bit version >>>> >>>>>>>>> >> > >>> ======================================================== >>>> >>>>>>>>> >> > >>>========== === == === C compiler is /usr/bin/gcc >>>> >>>>>>>>> >> > >>> -O1 -Wall -fno-strict-aliasing -fomit- frame-pointer >>>> >>>>>>>>> >> > >>> Executable linker is /usr/bin/gcc -O1 -Wall >>>> >>>>>>>>> >> > >>> -fno-strict-aliasing -fomit- frame-pointer >>>> >>>>>>>>> >> > >>> -Wl,--export-dynamic Dynamic Lib linker is >>>> >>>>>>>>> >> > >>> /usr/bin/gcc -shared $(CFLAGS) $(DLCFLAGS) -Wl,- >>>> >>>>>>>>> >> > >>> shared,-soname=$(LIBPARI_SONAME) Looking in C lib for >>>> >>>>>>>>> >> > >>> some symbols... >>>> >>>>>>>>> >> > >>> ...I did not find exp2. >>>> >>>>>>>>> >> > >>> ...I did not find log2. >>>> >>>>>>>>> >> > >>> ...Found strftime. >>>> >>>>>>>>> >> > >>> ...Found getrusage. >>>> >>>>>>>>> >> > >>> ...Found sigaction. >>>> >>>>>>>>> >> > >>> ...Found TIOCGWINSZ. >>>> >>>>>>>>> >> > >>> ...Found getrlimit. >>>> >>>>>>>>> >> > >>> ...Found stat. >>>> >>>>>>>>> >> > >>> ...Found vsnprintf. >>>> >>>>>>>>> >> > >>> ...I did not find dlopen. >>>> >>>>>>>>> >> > >>> Try again, with -ldl this time... >>>> >>>>>>>>> >> > >>> ...Found dlopen. >>>> >>>>>>>>> >> > >>> Checking for optional libraries and headers... >>>> >>>>>>>>> >> > >>> ...Found libgmp in /tmp/jason/sage-4.2.1/local/lib >>>> >>>>>>>>> >> > >>> ...Found gmp header in >>>> >>>>>>>>> >> > >>> /tmp/jason/sage-4.2.1/local/include Using GNU MP, >>>> >>>>>>>>> >> > >>> version 4.2.1 >>>> >>>>>>>>> >> > >>> ### >>>> >>>>>>>>> >> > >>> ### libX11.so not found. Please install X11 development >>>> >>>>>>>>> >> > >>> files. ### They usually come in XFree86-devel (RPM) or >>>> >>>>>>>>> >> > >>> xlibs-dev (Debian) packages ### >>>> >>>>>>>>> >> > >>> ### X11 not found >>>> >>>>>>>>> >> > >>> ### FLTK not found. Building without FLTK support >>>> >>>>>>>>> >> > >>> Hi-Res Graphics: none >>>> >>>>>>>>> >> > >>> ...Found libreadline in /tmp/jason/sage-4.2.1/local/lib >>>> >>>>>>>>> >> > >>> ...Found readline header in >>>> >>>>>>>>> >> > >>> /tmp/jason/sage-4.2.1/local/include/readline ...Found >>>> >>>>>>>>> >> > >>> history header in >>>> >>>>>>>>> >> > >>> /tmp/jason/sage-4.2.1/local/include/readline ### ### >>>> >>>>>>>>> >> > >>> libncurses.so not found. Please install ncurses >>>> >>>>>>>>> >> > >>> development files. ### They usually come in >>>> >>>>>>>>> >> > >>> ncurses-devel (RPM) or libncurses-dev (Debian) packages >>>> >>>>>>>>> >> > >>> ### >>>> >>>>>>>>> >> > >>> ### >>>> >>>>>>>>> >> > >>> ### Readline library detected, but does not seem to work >>>> >>>>>>>>> >> > >>> ### >>>> >>>>>>>>> >> > >>> ### Building without GNU readline support >>>> >>>>>>>>> >> > >>> Installation prefix ? [/tmp/jason/sage-4.2.1/local] >>>> >>>>>>>>> >> > >>> ...for architecture-independent files (share-prefix) ? >>>> >>>>>>>>> >> > >>> [/tmp/jason/sage-4.2.1/local/share] >>>> >>>>>>>>> >> > >>> Installation directories for: >>>> >>>>>>>>> >> > >>> ...executables (gp, gphelp) ? >>>> >>>>>>>>> >> > >>> [/tmp/jason/sage-4.2.1/local/bin] ...libraries (libpari) >>>> >>>>>>>>> >> > >>> ? [/tmp/jason/sage-4.2.1/local/lib] ...include files ? >>>> >>>>>>>>> >> > >>> [/tmp/jason/sage-4.2.1/local/include] ...manual pages ? >>>> >>>>>>>>> >> > >>> [/tmp/jason/sage-4.2.1/local/share/man/man1] ...emacs >>>> >>>>>>>>> >> > >>> macros ? >>>> >>>>>>>>> >> > >>> [/tmp/jason/sage-4.2.1/local/share/emacs/site-lisp/pari] >>>> >>>>>>>>> >> > >>> ...other system-dependant data ? >>>> >>>>>>>>> >> > >>> [/tmp/jason/sage-4.2.1/local/lib/pari] ...other >>>> >>>>>>>>> >> > >>> system-independant data ? >>>> >>>>>>>>> >> > >>> [/tmp/jason/sage-4.2.1/local/share/pari] Default is >>>> >>>>>>>>> >> > >>> dynamic executable and shared library >>>> >>>>>>>>> >> > >>> ======================================================== >>>> >>>>>>>>> >> > >>>========== === == === Extracting >>>> >>>>>>>>> >> > >>> examples/Makefile.linux-i686 Extracting >>>> >>>>>>>>> >> > >>> Olinux-i686/Makefile >>>> >>>>>>>>> >> > >>> Extracting Olinux-i686/../Odos/paricfg.h >>>> >>>>>>>>> >> > >>> ./config/paricfgDOS.h.SH: line 3: >>>> >>>>>>>>> >> > >>> Olinux-i686/../Odos/paricfg.h: No such file or directory >>>> >>>>>>>>> >> > >>> Extracting Olinux-i686/paricfg.h >>>> >>>>>>>>> >> > >>> Extracting Makefile >>>> >>>>>>>>> >> > >>> Extracting scripts and macros >>>> >>>>>>>>> >> > >>> ...in doc >>>> >>>>>>>>> >> > >>> ...in emacs >>>> >>>>>>>>> >> > >>> ...in misc >>>> >>>>>>>>> >> > >>> ======================================================== >>>> >>>>>>>>> >> > >>>========== === == === Shall we try to build pari 2.3.3 >>>> >>>>>>>>> >> > >>> (released) now (y/n)? [n] Ok. Type "make install" when >>>> >>>>>>>>> >> > >>> you are ready >>>> >>>>>>>>> >> > >>> Bye ! >>>> >>>>>>>>> >> > >>> Making gp in Olinux-i686 >>>> >>>>>>>>> >> > >>> make[1]: Entering directory >>>> >>>>>>>>> >> > >>> `/tmp/jason/sage-4.2.1/spkg/build/pari-2.3.3.p5/src/Olin >>>> >>>>>>>>> >> > >>>ux-i686' File ../src/funclist not changed. >>>> >>>>>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers >>>> >>>>>>>>> >> > >>> -I../src/language -o gp.o ../src/gp/gp.c /usr/bin/gcc >>>> >>>>>>>>> >> > >>> -c -O1 -Wall >>>> >>>>>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - >>>> >>>>>>>>> >> > >>> I../src/headers -I../src/language -o gp_rl.o >>>> >>>>>>>>> >> > >>> ../src/gp/gp_rl.c /usr/bin/gcc -c -O1 -Wall >>>> >>>>>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - >>>> >>>>>>>>> >> > >>> I../src/headers -I../src/graph -o plotport.o >>>> >>>>>>>>> >> > >>> ../src/graph/plotport.c /usr/bin/gcc -c -O1 -Wall >>>> >>>>>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - >>>> >>>>>>>>> >> > >>> I../src/headers -o plotnull.o ../src/graph/plotnull.c >>>> >>>>>>>>> >> > >>> cat ../src/kernel/gmp/mp.c ../src/kernel/none/cmp.c >>>> >>>>>>>>> >> > >>> ../src/kernel/none/gcdll.c ../src/kernel/none/ratlift.c >>>> >>>>>>>>> >> > >>> ../src/kernel/none/invmod.c >>>> >>>>>>>>> >> > >>> ../src/kernel/gmp/gcd.c ../src/kernel/none/mp_indep.c >>>> >>>>>>>>> >> > >>> ../src/kernel/none/add.c >>>> >>>>>>>>> >> > >>> >>>> >>>>>>>>> >> > >>> > mp.c >>>> >>>>>>>>> >> > >>> >>>> >>>>>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers >>>> >>>>>>>>> >> > >>> -I/tmp/jason/sage-4.2.1/local/include -o mp.o mp.c >>>> >>>>>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o >>>> >>>>>>>>> >> > >>> mpinl.o ../src/kernel/none/mpinl.c >>>> >>>>>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o alglin1.o >>>> >>>>>>>>> >> > >>> ../src/basemath/alglin1.c /usr/bin/gcc -c -O1 -Wall >>>> >>>>>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - >>>> >>>>>>>>> >> > >>> I../src/headers -o alglin2.o ../src/basemath/alglin2.c >>>> >>>>>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o arith1.o >>>> >>>>>>>>> >> > >>> ../src/basemath/arith1.c /usr/bin/gcc -c -O1 -Wall >>>> >>>>>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - >>>> >>>>>>>>> >> > >>> I../src/headers -o arith2.o ../src/basemath/arith2.c >>>> >>>>>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o base1.o >>>> >>>>>>>>> >> > >>> ../src/basemath/base1.c /usr/bin/gcc -c -O1 -Wall >>>> >>>>>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - >>>> >>>>>>>>> >> > >>> I../src/headers -o base2.o ../src/basemath/base2.c >>>> >>>>>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o base3.o >>>> >>>>>>>>> >> > >>> ../src/basemath/base3.c /usr/bin/gcc -c -O1 -Wall >>>> >>>>>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - >>>> >>>>>>>>> >> > >>> I../src/headers -o base4.o ../src/basemath/base4.c >>>> >>>>>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o base5.o >>>> >>>>>>>>> >> > >>> ../src/basemath/base5.c /usr/bin/gcc -c -O1 -Wall >>>> >>>>>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - >>>> >>>>>>>>> >> > >>> I../src/headers -o bibli1.o ../src/basemath/bibli1.c >>>> >>>>>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o bibli2.o >>>> >>>>>>>>> >> > >>> ../src/basemath/bibli2.c /usr/bin/gcc -c -O1 -Wall >>>> >>>>>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - >>>> >>>>>>>>> >> > >>> I../src/headers -o buch1.o ../src/basemath/buch1.c >>>> >>>>>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o buch2.o >>>> >>>>>>>>> >> > >>> ../src/basemath/buch2.c /usr/bin/gcc -c -O1 -Wall >>>> >>>>>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - >>>> >>>>>>>>> >> > >>> I../src/headers -o buch3.o ../src/basemath/buch3.c >>>> >>>>>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o buch4.o >>>> >>>>>>>>> >> > >>> ../src/basemath/buch4.c /usr/bin/gcc -c -O1 -Wall >>>> >>>>>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - >>>> >>>>>>>>> >> > >>> I../src/headers -o Flx.o ../src/basemath/Flx.c >>>> >>>>>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o galconj.o >>>> >>>>>>>>> >> > >>> ../src/basemath/galconj.c /usr/bin/gcc -c -O1 -Wall >>>> >>>>>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - >>>> >>>>>>>>> >> > >>> I../src/headers -o gen1.o ../src/basemath/gen1.c >>>> >>>>>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o gen2.o >>>> >>>>>>>>> >> > >>> ../src/basemath/gen2.c >>>> >>>>>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o gen3.o >>>> >>>>>>>>> >> > >>> ../src/basemath/gen3.c >>>> >>>>>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o >>>> >>>>>>>>> >> > >>> ifactor1.o ../src/basemath/ifactor1.c /usr/bin/gcc -c >>>> >>>>>>>>> >> > >>> -O1 -Wall -fno-strict-aliasing -fomit-frame-pointer -I. >>>> >>>>>>>>> >> > >>> - I../src/headers -o perm.o ../src/basemath/perm.c >>>> >>>>>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o >>>> >>>>>>>>> >> > >>> polarit1.o ../src/basemath/polarit1.c /usr/bin/gcc -c >>>> >>>>>>>>> >> > >>> -O1 -Wall -fno-strict-aliasing -fomit-frame-pointer -I. >>>> >>>>>>>>> >> > >>> - I../src/headers -o polarit2.o >>>> >>>>>>>>> >> > >>> ../src/basemath/polarit2.c /usr/bin/gcc -c -O1 -Wall >>>> >>>>>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - >>>> >>>>>>>>> >> > >>> I../src/headers -o polarit3.o >>>> >>>>>>>>> >> > >>> ../src/basemath/polarit3.c /usr/bin/gcc -c -O1 -Wall >>>> >>>>>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - >>>> >>>>>>>>> >> > >>> I../src/headers -o Qfb.o ../src/basemath/Qfb.c >>>> >>>>>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o RgX.o >>>> >>>>>>>>> >> > >>> ../src/basemath/RgX.c >>>> >>>>>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o rootpol.o >>>> >>>>>>>>> >> > >>> ../src/basemath/rootpol.c /usr/bin/gcc -c -O1 -Wall >>>> >>>>>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - >>>> >>>>>>>>> >> > >>> I../src/headers -o subcyclo.o ../src/basemath/subcyclo.c >>>> >>>>>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o >>>> >>>>>>>>> >> > >>> subgroup.o ../src/basemath/subgroup.c /usr/bin/gcc -c >>>> >>>>>>>>> >> > >>> -O1 -Wall -fno-strict-aliasing -fomit-frame-pointer -I. >>>> >>>>>>>>> >> > >>> - I../src/headers -o trans1.o ../src/basemath/trans1.c >>>> >>>>>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o trans2.o >>>> >>>>>>>>> >> > >>> ../src/basemath/trans2.c /usr/bin/gcc -c -O1 -Wall >>>> >>>>>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - >>>> >>>>>>>>> >> > >>> I../src/headers -o trans3.o ../src/basemath/trans3.c cd >>>> >>>>>>>>> >> > >>> ../src/desc && /usr/bin/perl gen_member pari.desc > >>>> >>>>>>>>> >> > >>> members-linux- i686-15930.tmp mv >>>> >>>>>>>>> >> > >>> ../src/desc/members-linux-i686-15930.tmp >>>> >>>>>>>>> >> > >>> ../src/language/members.h /usr/bin/gcc -c -O1 -Wall >>>> >>>>>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - >>>> >>>>>>>>> >> > >>> I../src/headers -o anal.o ../src/language/anal.c >>>> >>>>>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o compat.o >>>> >>>>>>>>> >> > >>> ../src/language/compat.c /usr/bin/gcc -c -O1 -Wall >>>> >>>>>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - >>>> >>>>>>>>> >> > >>> I../src/headers -o default.o ../src/language/default.c >>>> >>>>>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o errmsg.o >>>> >>>>>>>>> >> > >>> ../src/language/errmsg.c /usr/bin/gcc -c -O1 -Wall >>>> >>>>>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - >>>> >>>>>>>>> >> > >>> I../src/headers -o es.o ../src/language/es.c >>>> >>>>>>>>> >> > >>> cd ../src/desc && /usr/bin/perl gen_proto basic >>>> >>>>>>>>> >> > >>> pari.desc > init-linux- i686-15930.tmp >>>> >>>>>>>>> >> > >>> mv ../src/desc/init-linux-i686-15930.tmp >>>> >>>>>>>>> >> > >>> ../src/language/init.h /usr/bin/gcc -c -O1 -Wall >>>> >>>>>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - >>>> >>>>>>>>> >> > >>> I../src/headers -o init.o ../src/language/init.c >>>> >>>>>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o intnum.o >>>> >>>>>>>>> >> > >>> ../src/language/intnum.c /usr/bin/gcc -c -O1 -Wall >>>> >>>>>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - >>>> >>>>>>>>> >> > >>> I../src/headers -o members.o ../src/language/members.c >>>> >>>>>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o sumiter.o >>>> >>>>>>>>> >> > >>> ../src/language/sumiter.c /usr/bin/gcc -c -O1 -Wall >>>> >>>>>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - >>>> >>>>>>>>> >> > >>> I../src/headers -o aprcl.o ../src/modules/aprcl.c >>>> >>>>>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o elldata.o >>>> >>>>>>>>> >> > >>> ../src/modules/elldata.c /usr/bin/gcc -c -O1 -Wall >>>> >>>>>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - >>>> >>>>>>>>> >> > >>> I../src/headers -o elliptic.o ../src/modules/elliptic.c >>>> >>>>>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o galois.o >>>> >>>>>>>>> >> > >>> ../src/modules/galois.c /usr/bin/gcc -c -O1 -Wall >>>> >>>>>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - >>>> >>>>>>>>> >> > >>> I../src/headers -o groupid.o ../src/modules/groupid.c >>>> >>>>>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o kummer.o >>>> >>>>>>>>> >> > >>> ../src/modules/kummer.c /usr/bin/gcc -c -O1 -Wall >>>> >>>>>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - >>>> >>>>>>>>> >> > >>> I../src/headers -o mpqs.o ../src/modules/mpqs.c >>>> >>>>>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o >>>> >>>>>>>>> >> > >>> nffactor.o ../src/modules/nffactor.c /usr/bin/gcc -c >>>> >>>>>>>>> >> > >>> -O1 -Wall -fno-strict-aliasing -fomit-frame-pointer -I. >>>> >>>>>>>>> >> > >>> - I../src/headers -o part.o ../src/modules/part.c >>>> >>>>>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o stark.o >>>> >>>>>>>>> >> > >>> ../src/modules/stark.c /usr/bin/gcc -c -O1 -Wall >>>> >>>>>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - >>>> >>>>>>>>> >> > >>> I../src/headers -o subfield.o ../src/modules/subfield.c >>>> >>>>>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o thue.o >>>> >>>>>>>>> >> > >>> ../src/modules/thue.c rm -f libpari-gmp.so.2.3.3 >>>> >>>>>>>>> >> > >>> /usr/bin/gcc -o libpari-gmp.so.2.3.3 -shared -O1 -Wall >>>> >>>>>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer >>>> >>>>>>>>> >> > >>> -Wl,-shared,-soname=libpari-gmp.so.2 mp.o mpinl.o >>>> >>>>>>>>> >> > >>> alglin1.o alglin2.o arith1.o arith2.o base1.o base2.o >>>> >>>>>>>>> >> > >>> base3.o base4.o base5.o bibli1.o bibli2.o buch1.o >>>> >>>>>>>>> >> > >>> buch2.o buch3.o buch4.o Flx.o galconj.o gen1.o gen2.o >>>> >>>>>>>>> >> > >>> gen3.o ifactor1.o perm.o polarit1.o polarit2.o >>>> >>>>>>>>> >> > >>> polarit3.o Qfb.o RgX.o rootpol.o subcyclo.o subgroup.o >>>> >>>>>>>>> >> > >>> trans1.o trans2.o trans3.o anal.o compat.o default.o >>>> >>>>>>>>> >> > >>> errmsg.o es.o init.o intnum.o members.o sumiter.o >>>> >>>>>>>>> >> > >>> aprcl.o elldata.o elliptic.o galois.o groupid.o kummer.o >>>> >>>>>>>>> >> > >>> mpqs.o nffactor.o part.o stark.o subfield.o thue.o -lc >>>> >>>>>>>>> >> > >>> -ldl -lm >>>> >>>>>>>>> >> > >>> -L/tmp/jason/sage-4.2.1/local/lib -lgmp if test >>>> >>>>>>>>> >> > >>> "libpari-gmp.so.2.3.3" != "libpari.so"; then rm -f >>>> >>>>>>>>> >> > >>> libpari.so; ln -s libpari-gmp.so.2.3.3 libpari.so; fi >>>> >>>>>>>>> >> > >>> if test "libpari-gmp.so.2.3.3" != "libpari-gmp.so.2"; >>>> >>>>>>>>> >> > >>> then rm -f libpari-gmp.so.2; ln -s >>>> >>>>>>>>> >> > >>> libpari-gmp.so.2.3.3 libpari-gmp.so.2; fi rm -f gp-dyn >>>> >>>>>>>>> >> > >>> /usr/bin/gcc -o gp-dyn -O1 -Wall -fno-strict-aliasing >>>> >>>>>>>>> >> > >>> -fomit-frame-pointer -Wl,--export-dynamic gp.o >>>> >>>>>>>>> >> > >>> gp_init.o gp_rl.o highlvl.o whatnow.o plotport.o >>>> >>>>>>>>> >> > >>> plotnull.o >>>> >>>>>>>>> >> > >>> -L"/tmp/jason/sage-4.2.1/spkg/build/pari-2.3.3.p5/src/Ol >>>> >>>>>>>>> >> > >>>inux-i686" -L/tmp/jason/sage-4.2.1/local/lib -lpari -ldl >>>> >>>>>>>>> >> > >>> -lm - L/tmp/jason/sage-4.2.1/local/lib -lgmp >>>> >>>>>>>>> >> > >>> rm -f ../gp >>>> >>>>>>>>> >> > >>> ln -s Olinux-i686/gp-dyn ../gp >>>> >>>>>>>>> >> > >>> make[1]: Leaving directory >>>> >>>>>>>>> >> > >>> `/tmp/jason/sage-4.2.1/spkg/build/pari-2.3.3.p5/src/Olin >>>> >>>>>>>>> >> > >>>ux-i686' >>>> >>>>>>>>> >> > >>> jasonmox...@debian5-32:/tmp/jason/sage-4.2.1/spkg/build/ >>>> >>>>>>>>> >> > >>>pari-2.3.3 .p5 /s rc$ >>>> >>>>>>>>> >> > >>> >>>> >>>>>>>>> >> > >>> >>>> >>>>>>>>> >> > >>> >>>> >>>>>>>>> >> > >>> >>>> >>>>>>>>> >> > >>> If the line number where the error occurs is correct >>>> >>>>>>>>> >> > >>> then it looks like libm is at fault >>>> >>>>>>>>> >> > >>> >>>> >>>>>>>>> >> > >>> On Saturday 14 November 2009 19:23:19 Bill Hart wrote: >>>> >>>>>>>>> >> > >>> > Was the option -O1 passed to gcc in all instances >>>> >>>>>>>>> >> > >>> > where the problem occurred? >>>> >>>>>>>>> >> > >>> > >>>> >>>>>>>>> >> > >>> > I have heard of instances where -O1 will cause macro >>>> >>>>>>>>> >> > >>> > errors which cause the compiler to shut down. When a >>>> >>>>>>>>> >> > >>> > higher optimisation level is used the macro which >>>> >>>>>>>>> >> > >>> > causes the crash in gcc is optimised away. >>>> >>>>>>>>> >> > >>> > >>>> >>>>>>>>> >> > >>> > If that turns out to be the issue, the solution will >>>> >>>>>>>>> >> > >>> > be to simply compile that one file with -O2 >>>> >>>>>>>>> >> > >>> > optimisation. For most things -O1 is far too slow >>>> >>>>>>>>> >> > >>> > anyway. >>>> >>>>>>>>> >> > >>> > >>>> >>>>>>>>> >> > >>> > Bill. >>>> >>>>>>>>> >> > >>> > >>>> >>>>>>>>> >> > >>> > 2009/11/14 William Stein <[email protected]>: >>>> >>>>>>>>> >> > >>> > > On Sat, Nov 14, 2009 at 12:05 AM, Jason Moxham >>>> >>>>>>>>> >> > >>> > > >>>> >>>>>>>>> >> > >>> > > <[email protected]> wrote: >>>> >>>>>>>>> >> > >>> > >> Hi >>>> >>>>>>>>> >> > >>> > >> >>>> >>>>>>>>> >> > >>> > >> I thought I would give it a try , but I cant login >>>> >>>>>>>>> >> > >>> > >> to debian32 , doesn't like my password , although >>>> >>>>>>>>> >> > >>> > >> boxen and fedora32 are OK ?? I thought the >>>> >>>>>>>>> >> > >>> > >> passwords were all the same for the virtual >>>> >>>>>>>>> >> > >>> > >> machines. >>>> >>>>>>>>> >> > >>> > > >>>> >>>>>>>>> >> > >>> > > No. I've added your login info so you should be >>>> >>>>>>>>> >> > >>> > > able to login now. >>>> >>>>>>>>> >> > >>> > > >>>> >>>>>>>>> >> > >>> > >> I havent managed to reproduce any error on some >>>> >>>>>>>>> >> > >>> > >> other 32bit machines but nothing was exactly the >>>> >>>>>>>>> >> > >>> > >> same. >>>> >>>>>>>>> >> > >>> > > >>>> >>>>>>>>> >> > >>> > > You might want to try starting by doing >>>> >>>>>>>>> >> > >>> > > >>>> >>>>>>>>> >> > >>> > > export SAGE_FAT_BINARY="yes" >>>> >>>>>>>>> >> > >>> > > >>>> >>>>>>>>> >> > >>> > > then build sage-4.2.1.tar by typing "make", which is >>>> >>>>>>>>> >> > >>> > > at >>>> >>>>>>>>> >> > >>> > > >>>> >>>>>>>>> >> > >>> > > >>>> >>>>>>>>> >> > >>> > > http://sage.math.washington.edu/home/wstein/farm/src >>>> >>>>>>>>> >> > >>> > >/ >>>> >>>>>>>>> >> > >>> > > >>>> >>>>>>>>> >> > >>> > > It'll take a few hours, but you should get the >>>> >>>>>>>>> >> > >>> > > error. >>>> >>>>>>>>> >> > >>> > > >>>> >>>>>>>>> >> > >>> > > William >>>> >>>> >>> >>> > >>> >> >> > >> > > > > -- > William Stein > Associate Professor of Mathematics > University of Washington > http://wstein.org > > > > --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "mpir-devel" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/mpir-devel?hl=en -~----------~----~----~----~------~----~------~--~---
