Hi Mark,
Somehow your Java runtime and Java3D library are not linked properly.
Did you install 64-bit version of Java as well as 64-bit version of Java3D?
Can you run these 2 commands on the windows command line and let me know the
output?
1) java -version
2) java -d64 -version
Also, you can try to modify the startMZmine.bat script and add USE_64_BIT=-d64
Tomas
On Nov 2, 2010, at 3:50 AM, <[email protected]> wrote:
> Hi Tomas,
>
> I have installed mzmine 2.1 on windows 7 64 bit with Java 6 and Java 3D
> installed. I have verified that Java 3D works by visiting the java 3d test
> page atwwww.downloadjava3d.com/java3dtest.php and indeed I do see a 3D
> spinning image. (The hardware is an Intel Xeon 8 core processor with an ATI
> FirePro V5700 Graphics card).
>
> However when I load mass spectral data and click on “Visualisation / 3D plot
> nothing happens. The 2D and TIC plots all work fine.
>
> The Java console error message is listed below
>
> Any thoughts?
>
> Many thanks
>
> Mark
>
> [18:43:20|FINEST|ThreeDVisualizer]: Opening a new 3D visualizer setup dialog
> Exception in thread "AWT-EventQueue-0" java.lang.NoClassDefFoundError:
> javax/med
> ia/j3d/GeometryArray
> at
> net.sf.mzmine.modules.visualization.threed.ThreeDVisualizerWindow.<in
> it>(ThreeDVisualizerWindow.java:107)
> at
> net.sf.mzmine.modules.visualization.threed.ThreeDVisualizer.show3DVis
> ualizerSetupDialog(ThreeDVisualizer.java:152)
> at
> net.sf.mzmine.modules.visualization.threed.ThreeDVisualizer.show3DVis
> ualizerSetupDialog(ThreeDVisualizer.java:111)
> at
> net.sf.mzmine.modules.visualization.threed.ThreeDVisualizer.actionPer
> formed(ThreeDVisualizer.java:85)
> at javax.swing.AbstractButton.fireActionPerformed(Unknown Source)
> at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source)
> at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source)
> at javax.swing.DefaultButtonModel.setPressed(Unknown Source)
> at javax.swing.AbstractButton.doClick(Unknown Source)
> at javax.swing.plaf.basic.BasicMenuItemUI.doClick(Unknown Source)
> at
> javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(Unknown
> Source)
> at java.awt.AWTEventMulticaster.mouseReleased(Unknown Source)
> at java.awt.Component.processMouseEvent(Unknown Source)
> at javax.swing.JComponent.processMouseEvent(Unknown Source)
> at java.awt.Component.processEvent(Unknown Source)
> at java.awt.Container.processEvent(Unknown Source)
> at java.awt.Component.dispatchEventImpl(Unknown Source)
> at java.awt.Container.dispatchEventImpl(Unknown Source)
> at java.awt.Component.dispatchEvent(Unknown Source)
> at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source)
> at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source)
> at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source)
> at java.awt.Container.dispatchEventImpl(Unknown Source)
> at java.awt.Window.dispatchEventImpl(Unknown Source)
> at java.awt.Component.dispatchEvent(Unknown Source)
> at java.awt.EventQueue.dispatchEvent(Unknown Source)
> at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
> at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
> at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
> at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
> at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
> at java.awt.EventDispatchThread.run(Unknown Source)
> Caused by: java.lang.ClassNotFoundException: javax.media.j3d.GeometryArray
> at java.net.URLClassLoader$1.run(Unknown Source)
> at java.security.AccessController.doPrivileged(Native Method)
> at java.net.URLClassLoader.findClass(Unknown Source)
> at java.lang.ClassLoader.loadClass(Unknown Source)
> at sun.misc.Launcher$AppClassLoader.loadClass(Unknown Source)
> at java.lang.ClassLoader.loadClass(Unknown Source)
> ... 32 more
>
>
>
>
>
>
>
> -- -----------------------------------------
> Mark Earll
> Research Leader - Metabolomics
> Analytical Sciences (Office 102/65)
>
> <image002.jpg>
>
> Jealott's Hill International Research Centre
> Bracknell
> Berkshire
> RG42 6EY
> United Kingdom
> Direct +44 1344 414316
> [email protected]
> www.syngenta.com
>
>
>
> This message may contain confidential information. If you are not the
> designated recipient, please notify the sender immediately, and delete the
> original and any copies. Any use of the message by you is prohibited.
> ------------------------------------------------------------------------------
> Nokia and AT&T present the 2010 Calling All Innovators-North America contest
> Create new apps & games for the Nokia N8 for consumers in U.S. and Canada
> $10 million total in prizes - $4M cash, 500 devices, nearly $6M in marketing
> Develop with Nokia Qt SDK, Web Runtime, or Java and Publish to Ovi Store
> http://p.sf.net/sfu/nokia-dev2dev_______________________________________________
> Mzmine-devel mailing list
> [email protected]
> https://lists.sourceforge.net/lists/listinfo/mzmine-devel
===============================================
Tomas Pluskal
G0 Cell Unit, Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Okinawa 904-0412, Japan
TEL: +81-98-966-8684
------------------------------------------------------------------------------
Nokia and AT&T present the 2010 Calling All Innovators-North America contest
Create new apps & games for the Nokia N8 for consumers in U.S. and Canada
$10 million total in prizes - $4M cash, 500 devices, nearly $6M in marketing
Develop with Nokia Qt SDK, Web Runtime, or Java and Publish to Ovi Store
http://p.sf.net/sfu/nokia-dev2dev
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