Hi Mark,
you can also use the "ReAdW" program to convert your RAW files into .mzXML
files. You can do that on any machine running Xcalibur, and then copy the
resulting mzXML files to your PC. MZmine can open mzXML files on any platform.
Best regards,
Tomas
On Nov 10, 2010, at 3:01 AM, <[email protected]>
<[email protected]> wrote:
> Hi Tomas and fellow mzmine users,
>
> I have found a workaround that allows me to read in Thermo .RAW files in
> mzMine on Windows 7. Its a bit of a ‘kerfuffle’ but it does work:
>
> Install the Windows 7 XP Mode virtual machine
> Install Thermo Xcalibur 2.1 and accompanying files in the VM
> Install Java and Java 3D 32bit versions in the VM (even though the 3d plot
> doesn’t seem to work inside the VM)
> Copy the mzMine program files to the VM
>
> Run mzmine in the XP virtual machine
> Upload the individual .RAW files into mzMine (The VM will probably use only
> one CPU so this is slow)
> Save the mzMine file to disk using the “Save project” option (very slow)
>
> Go back to Windows 7 64 bit and open the mzMine file. (This was lightning
> fast on my new PC but I don’t want to gloat ;-)
>
> The file was 4.4GB, I’m hoping that the process will work on files 3 times
> that size.
>
> I hope this helps anyone else out there with the same problems,
>
> Cheers,
> Mark
> -- -----------------------------------------
> Mark Earll
> Research Leader - Metabolomics
> Analytical Sciences (Office 102/65)
>
> <image003.jpg>
>
> Jealott's Hill International Research Centre
> Bracknell
> Berkshire
> RG42 6EY
> United Kingdom
> Direct +44 1344 414316
> [email protected]
> www.syngenta.com
>
>
>
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===============================================
Tomas Pluskal
G0 Cell Unit, Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Okinawa 904-0412, Japan
TEL: +81-98-966-8684
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