Oh I'm slightly ashamed to admit that that worked a treat! Now it works fine. Should have thought of it myself of course :D Thanks!
On 27/05/2011 08:59, Tomas Pluskal wrote: > This exception looks strange. > For a start, can you try to update your Java installation? > I believe the version 1.6.0_02-b06 is quite old. > Latest version for Windows is 1.6.0_25 - > http://download.oracle.com/otn-pub/java/jdk/6u25-b06/jdk-6u25-windows-i586.exe > > Tomas > > > > On May 19, 2011, at 10:05 PM, Chiarina Darrah wrote: > >> I'm using mzmine 2.2 now :-) >> >> My java is >> C:\>java -version >> java version "1.6.0_02" >> Java(TM) SE Runtime Environment (build 1.6.0_02-b06) >> Java HotSpot(TM) Client VM (build 1.6.0_02-b06, mixed mode) >> >> My computer is >> C:\>systeminfo (edited!) >> OS Name: Microsoft Windows XP Professional >> OS Version: 5.1.2600 Service Pack 2 Build 2600 >> System type: X86-based PC >> Processor(s): 2 Processor(s) Installed. >> [01]: x86 Family 6 Model 15 Stepping 11 >> GenuineIntel >> ~2327 Mhz >> [02]: x86 Family 6 Model 15 Stepping 11 >> GenuineIntel >> ~2327 Mhz >> BIOS Version: DELL - 15 >> Total Physical Memory: 2,005 MB >> Available Physical Memory: 637 MB >> Virtual Memory: Max Size: 2,048 MB >> Virtual Memory: Available: 2,008 MB >> Virtual Memory: In Use: 40 MB >> Hotfix(s): 384 Hotfix(s) Installed. >> >> And here is my exception report! >> Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException >> at java.awt.Container.addNotify(Container.java:2592) >> at javax.swing.JComponent.addNotify(JComponent.java:4683) >> at java.awt.Container.addNotify(Container.java:2592) >> at javax.swing.JComponent.addNotify(JComponent.java:4683) >> at java.awt.Container.addNotify(Container.java:2592) >> at javax.swing.JComponent.addNotify(JComponent.java:4683) >> at java.awt.Container.addNotify(Container.java:2592) >> at javax.swing.JComponent.addNotify(JComponent.java:4683) >> at java.awt.Container.addNotify(Container.java:2592) >> at javax.swing.JComponent.addNotify(JComponent.java:4683) >> at java.awt.Container.addNotify(Container.java:2592) >> at javax.swing.JComponent.addNotify(JComponent.java:4683) >> at java.awt.Container.addNotify(Container.java:2592) >> at javax.swing.JComponent.addNotify(JComponent.java:4683) >> at java.awt.Container.addNotify(Container.java:2592) >> at javax.swing.JComponent.addNotify(JComponent.java:4683) >> at javax.swing.JRootPane.addNotify(JRootPane.java:735) >> at java.awt.Container.addNotify(Container.java:2592) >> at javax.swing.JComponent.addNotify(JComponent.java:4683) >> at java.awt.Container.addImpl(Container.java:1062) >> at javax.swing.JLayeredPane.addImpl(JLayeredPane.java:209) >> at javax.swing.JDesktopPane.addImpl(JDesktopPane.java:470) >> at java.awt.Container.add(Container.java:903) >> at >> net.sf.mzmine.desktop.impl.MainPanel.addInternalFrame(MainPanel.java: >> 110) >> at >> net.sf.mzmine.desktop.impl.MainWindow.addInternalFrame(MainWindow.jav >> a:73) >> at >> net.sf.mzmine.modules.visualization.peaksummary.PeakSummaryVisualizer >> .showNewPeakSummaryWindow(PeakSummaryVisualizer.java:75) >> at >> net.sf.mzmine.modules.visualization.peaklist.PeakListTablePopupMenu.a >> ctionPerformed(PeakListTablePopupMenu.java:464) >> at >> javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:19 >> 95) >> at >> javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.jav >> a:2318) >> at >> javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel >> .java:387) >> at >> javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242 >> ) >> at javax.swing.AbstractButton.doClick(AbstractButton.java:357) >> at >> javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:1 >> 216) >> at >> javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMen >> uItemUI.java:1257) >> at java.awt.Component.processMouseEvent(Component.java:6038) >> at javax.swing.JComponent.processMouseEvent(JComponent.java:3265) >> at java.awt.Component.processEvent(Component.java:5803) >> at java.awt.Container.processEvent(Container.java:2058) >> at java.awt.Component.dispatchEventImpl(Component.java:4410) >> at java.awt.Container.dispatchEventImpl(Container.java:2116) >> at java.awt.Component.dispatchEvent(Component.java:4240) >> at >> java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4322 >> ) >> at >> java.awt.LightweightDispatcher.processMouseEvent(Container.java:3986) >> >> at >> java.awt.LightweightDispatcher.dispatchEvent(Container.java:3916) >> at java.awt.Container.dispatchEventImpl(Container.java:2102) >> at java.awt.Window.dispatchEventImpl(Window.java:2429) >> at java.awt.Component.dispatchEvent(Component.java:4240) >> at java.awt.EventQueue.dispatchEvent(EventQueue.java:599) >> at >> java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThre >> ad.java:273) >> at >> java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread. >> java:183) >> at >> java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThre >> ad.java:173) >> at >> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:168) >> >> at >> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:160) >> >> at java.awt.EventDispatchThread.run(EventDispatchThread.java:121) >> Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException >> at java.awt.Container.addNotify(Container.java:2592) >> at javax.swing.JComponent.addNotify(JComponent.java:4683) >> at java.awt.Container.addNotify(Container.java:2592) >> at javax.swing.JComponent.addNotify(JComponent.java:4683) >> at java.awt.Container.addNotify(Container.java:2592) >> at javax.swing.JComponent.addNotify(JComponent.java:4683) >> at java.awt.Container.addNotify(Container.java:2592) >> at javax.swing.JComponent.addNotify(JComponent.java:4683) >> at java.awt.Container.addNotify(Container.java:2592) >> at javax.swing.JComponent.addNotify(JComponent.java:4683) >> at java.awt.Container.addNotify(Container.java:2592) >> at javax.swing.JComponent.addNotify(JComponent.java:4683) >> at java.awt.Container.addNotify(Container.java:2592) >> at javax.swing.JComponent.addNotify(JComponent.java:4683) >> at java.awt.Container.addNotify(Container.java:2592) >> at javax.swing.JComponent.addNotify(JComponent.java:4683) >> at javax.swing.JRootPane.addNotify(JRootPane.java:735) >> at java.awt.Container.addNotify(Container.java:2592) >> at java.awt.Window.addNotify(Window.java:635) >> at java.awt.Window.pack(Window.java:663) >> at >> net.sf.mzmine.util.components.ComponentToolTipManager.showTipWindow(C >> omponentToolTipManager.java:130) >> at >> net.sf.mzmine.util.components.ComponentToolTipManager.initiateToolTip >> (ComponentToolTipManager.java:229) >> at >> net.sf.mzmine.util.components.ComponentToolTipManager.mouseEntered(Co >> mponentToolTipManager.java:195) >> at >> java.awt.AWTEventMulticaster.mouseEntered(AWTEventMulticaster.java:28 >> 3) >> at java.awt.Component.processMouseEvent(Component.java:6047) >> at javax.swing.JComponent.processMouseEvent(JComponent.java:3265) >> at java.awt.Component.processEvent(Component.java:5803) >> at java.awt.Container.processEvent(Container.java:2058) >> at java.awt.Component.dispatchEventImpl(Component.java:4410) >> at java.awt.Container.dispatchEventImpl(Container.java:2116) >> at java.awt.Component.dispatchEvent(Component.java:4240) >> at >> java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4322 >> ) >> at >> java.awt.LightweightDispatcher.trackMouseEnterExit(Container.java:411 >> 1) >> at >> java.awt.LightweightDispatcher.processMouseEvent(Container.java:3968) >> >> at >> java.awt.LightweightDispatcher.dispatchEvent(Container.java:3916) >> at java.awt.Container.dispatchEventImpl(Container.java:2102) >> at java.awt.Window.dispatchEventImpl(Window.java:2429) >> at java.awt.Component.dispatchEvent(Component.java:4240) >> at java.awt.EventQueue.dispatchEvent(EventQueue.java:599) >> at >> java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThre >> ad.java:273) >> at >> java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread. >> java:183) >> at >> java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThre >> ad.java:173) >> at >> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:168) >> >> at >> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:160) >> >> at java.awt.EventDispatchThread.run(EventDispatchThread.java:121) >> >> Thanks! >> Chiarina >> >> >> >> >> >> >> >> On 19/05/2011 06:30, Tomas Pluskal wrote: >>> It works for me in MZmine 2.2 >>> What platform are you using and what version of Java (try running 'java >>> -version')? >>> Do you see any exception reports in the MZmine console? >>> >>> Tomas >>> >>> On May 18, 2011, at 11:47 PM, Chiarina Darrah wrote: >>> >>>> Hi! I was wondering what happened to the peak row summary? When I click >>>> on a peak row>show>peak row summary nothing happens. In addition, when I >>>> mouse over the peak shape cell in the peaklist I don't get a little >>>> floating window with a list saying all the samples my peak appeared in, >>>> as there used to be. Is this a known issue? >>>> I know I can scroll across the entire peaklist but with 280 samples, >>>> it's very nice to have this little pop up list. Also because "row number >>>> of detected peaks" does not appear as a column until you export the >>>> peaklist, and the peak row summary/floating window give me an idea of >>>> this within mzmine. >>>> Many thanks, Chiarina. >>>> >>>> -- >>>> ================================================================== >>>> Chiarina Darrah >>>> >>>> Tel:+32 (0)9 331 38 85 fax:+32 (0)9 3313809 >>>> VIB Department of Plant Systems Biology, Ghent University >>>> Technologiepark 927, 9052 Gent, BELGIUM >>>> ch...@psb.vib-ugent.be http://www.psb.vib-ugent.be >>>> ================================================================== >>>> >>>> >>>> ------------------------------------------------------------------------------ >>>> What Every C/C++ and Fortran developer Should Know! >>>> Read this article and learn how Intel has extended the reach of its >>>> next-generation tools to help Windows* and Linux* C/C++ and Fortran >>>> developers boost performance applications - including clusters. >>>> http://p.sf.net/sfu/intel-dev2devmay >>>> _______________________________________________ >>>> Mzmine-devel mailing list >>>> Mzmine-devel@lists.sourceforge.net >>>> https://lists.sourceforge.net/lists/listinfo/mzmine-devel >>>> >>> =============================================== >>> Tomas Pluskal >>> G0 Cell Unit, Okinawa Institute of Science and Technology >>> 1919-1 Tancha, Onna-son, Okinawa 904-0412, Japan >>> TEL: +81-98-966-8684 >>> >>> >>> >>> >> >> -- >> ================================================================== >> Chiarina Darrah >> >> Tel:+32 (0)9 331 38 85 fax:+32 (0)9 3313809 >> VIB Department of Plant Systems Biology, Ghent University >> Technologiepark 927, 9052 Gent, BELGIUM >> ch...@psb.vib-ugent.be http://www.psb.vib-ugent.be >> ================================================================== >> >> >> ------------------------------------------------------------------------------ >> What Every C/C++ and Fortran developer Should Know! >> Read this article and learn how Intel has extended the reach of its >> next-generation tools to help Windows* and Linux* C/C++ and Fortran >> developers boost performance applications - including clusters. >> http://p.sf.net/sfu/intel-dev2devmay >> _______________________________________________ >> Mzmine-devel mailing list >> Mzmine-devel@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/mzmine-devel >> > =============================================== > Tomas Pluskal > G0 Cell Unit, Okinawa Institute of Science and Technology > 1919-1 Tancha, Onna-son, Okinawa 904-0412, Japan > TEL: +81-98-966-8684 > > > > -- ================================================================== Chiarina Darrah Tel:+32 (0)9 331 38 85 fax:+32 (0)9 3313809 VIB Department of Plant Systems Biology, Ghent University Technologiepark 927, 9052 Gent, BELGIUM ch...@psb.vib-ugent.be http://www.psb.vib-ugent.be ================================================================== ------------------------------------------------------------------------------ vRanger cuts backup time in half-while increasing security. With the market-leading solution for virtual backup and recovery, you get blazing-fast, flexible, and affordable data protection. Download your free trial now. http://p.sf.net/sfu/quest-d2dcopy1 _______________________________________________ Mzmine-devel mailing list Mzmine-devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mzmine-devel
