Hi Tomas,
I will solve this exception.
To run the heat map plot module first you have to define the sample groups in
the sample parameter option (project->set sample parameters) (at least two
groups) and define one of these groups as the reference group.
If the option "P-value legend" is selected, only the groups will be plot. If it
is not selected, the samples will be plotted individually.
Sandra
On 08/11/2011 04:51 AM, Tomas Pluskal wrote:
Hi Sandra,
I tried to run it, but I got this exception:
[10:49:42|FINEST|MainMenu]: Starting module Heat map plot with parameters
Output name: /tmp/aa.png, Output file type: png, Sample parameter: No
parameters defined, Group of reference: asdas, Only identified rows: false, Use
peak area: true, Scaling: true, Log: true, Show control samples: true, P-value
legend: true, Size p-value legend: 5, Height: 10, Width: 10, Column margin: 10,
Row margin: 10
Exception in thread "AWT-EventQueue-0" java.lang.NegativeArraySizeException
at
net.sf.mzmine.modules.peaklistmethods.dataanalysis.heatmaps.HeatMapTask.groupingDataset(HeatMapTask.java:463)
at
net.sf.mzmine.modules.peaklistmethods.dataanalysis.heatmaps.HeatMapTask.<init>(HeatMapTask.java:74)
at
net.sf.mzmine.modules.peaklistmethods.dataanalysis.heatmaps.HeatMapModule.runModule(HeatMapModule.java:50)
at net.sf.mzmine.desktop.impl.MainMenu.actionPerformed(MainMenu.java:338)
at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2028)
at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2351)
at
javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
at javax.swing.AbstractButton.doClick(AbstractButton.java:389)
at com.apple.laf.ScreenMenuItem.actionPerformed(ScreenMenuItem.java:95)
at java.awt.MenuItem.processActionEvent(MenuItem.java:627)
at java.awt.MenuItem.processEvent(MenuItem.java:586)
at java.awt.MenuComponent.dispatchEventImpl(MenuComponent.java:337)
at java.awt.MenuComponent.dispatchEvent(MenuComponent.java:325)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:682)
at java.awt.EventQueue.access$000(EventQueue.java:85)
at java.awt.EventQueue$1.run(EventQueue.java:638)
at java.awt.EventQueue$1.run(EventQueue.java:636)
at java.security.AccessController.doPrivileged(Native Method)
at
java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
at
java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
at java.awt.EventQueue$2.run(EventQueue.java:652)
at java.awt.EventQueue$2.run(EventQueue.java:650)
at java.security.AccessController.doPrivileged(Native Method)
at
java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:649)
at
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
at
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
at
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
Tomas
On Aug 10, 2011, at 11:02 PM, Castillo Sandra wrote:
Hi,
I just committed a new module to plot heat maps using R.
Any comment?
Sandra
------------------------------------------------------------------------------
uberSVN's rich system and user administration capabilities and model
configuration take the hassle out of deploying and managing Subversion and
the tools developers use with it. Learn more about uberSVN and get a free
download at: http://p.sf.net/sfu/wandisco-dev2dev
_______________________________________________
Mzmine-devel mailing list
Mzmine-devel@lists.sourceforge.net<mailto:Mzmine-devel@lists.sourceforge.net>
https://lists.sourceforge.net/lists/listinfo/mzmine-devel
===============================================
Tomas Pluskal
G0 Cell Unit, Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Okinawa 904-0412, Japan
TEL: +81-98-966-8684
------------------------------------------------------------------------------
Get a FREE DOWNLOAD! and learn more about uberSVN rich system,
user administration capabilities and model configuration. Take
the hassle out of deploying and managing Subversion and the
tools developers use with it.
http://p.sf.net/sfu/wandisco-dev2dev
_______________________________________________
Mzmine-devel mailing list
Mzmine-devel@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/mzmine-devel
