Thanks for the quick response! I did open the mzXML file with the
insilicos viewer, and saw that it must be a problem with the
conversion from .d to .mzXML. Are there any alternatives to
proteowizard that can do that or are there specific setting in
proteowizard that I should be aware of to maximize conversion? Again
thanks a bunch!
-Julian
Hi Julian,
Is that before or after processing with MzMine? You could try opening
the mzXML file with the insilicos viewer
(http://insilicos.com/products/insilicos-viewer-1) and compare that to
the original .d file to check it is being converted properly.
Cheers,
Gavin.
From: Julian Kang [mailto:manduman88@...]
Sent: 11 October 2011 19:25
To: mzmine-devel@...
Subject: [Mzmine-devel] Missing peaks in MzMine
Hi,
I converted an Agilent MS file (.d) to .mzXML using proteowizard so I
can analyze the data using MzMine. However, when I compare some of the
spectra from MzMine to Agilent Qualitative Analysis (4.0), I see that
there are some very noticeable peaks in the Agilent Qual which are
missing in MzMine. Is there any fix to this by chance? Thanks!
-Julian
--
Cornell University
Class of 2010
B.A. in Chemistry
--
Cornell University
Class of 2010
B.A. in Chemistry
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