G'day, Renjin looks interesting. It's too immature for the sorts of scripts used by baseline correction but is worth keeping an eye on.
I looked at Rserve initially when thinking about R-integration but opted for plain rJava as it doesn't require the user to (install and) run Rserve outside MZmine. The price the user pays is in setting various environment variables to configure rJava, which can be awkward. Another option is Rcaller https://code.google.com/p/rcaller/ by some of the same people working on Renjin. On balance I reckon Rserve might be the best option - I'll put something in the tracker. Regards, Chris. > Hi, > the other option could be the usage of RServe > (http://www.rforge.net/Rserve/doc.html) . It would also decouple > Mzmine and R. The usage of different PCs for Mzmine and R would also > be possible. > > Marco > > > Am 08.03.2012 06:51, schrieb Tomas Pluskal: >> Hi Chris, >> >> I noticed there is a native Java implementation of R: >> http://code.google.com/p/renjin/ >> Perhaps if we use this, it would make MZmine deployment easier (no >> need to install R and edit the startMZmine script). >> What do you think? >> >> Tomas >> >> >> On Mar 6, 2012, at 12:57 PM, Pudney Chris (ext) GBJH wrote: >> >>> G'day, >>> >>> Verónica, I developed the baseline correction module. >>> >>> Could you please share with us your startMZmine_Windows.bat file. This >>> might help us diagnose the problem. >>> >>> Regards, >>> Chris. >>> >>> This message may contain confidential information. If you are not >>> the designated recipient, please notify the sender immediately, and >>> delete the original and any copies. Any use of the message by you is >>> prohibited. >>> >>> >>> ------------------------------------------------------------------------------ >>> Keep Your Developer Skills Current with LearnDevNow! >>> The most comprehensive online learning library for Microsoft developers >>> is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, >>> Metro Style Apps, more. Free future releases when you subscribe now! >>> http://p.sf.net/sfu/learndevnow-d2d >>> _______________________________________________ >>> Mzmine-devel mailing list >>> [email protected] >>> https://lists.sourceforge.net/lists/listinfo/mzmine-devel >> >> =============================================== >> Tomas Pluskal >> G0 Cell Unit, Okinawa Institute of Science and Technology Graduate >> University >> 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan >> TEL: +81-98-966-8684 >> >> >> >> ------------------------------------------------------------------------------ >> Virtualization& Cloud Management Using Capacity Planning >> Cloud computing makes use of virtualization - but cloud computing >> also focuses on allowing computing to be delivered as a service. >> http://www.accelacomm.com/jaw/sfnl/114/51521223/ >> >> >> _______________________________________________ >> Mzmine-devel mailing list >> [email protected] >> https://lists.sourceforge.net/lists/listinfo/mzmine-devel This message may contain confidential information. If you are not the designated recipient, please notify the sender immediately, and delete the original and any copies. Any use of the message by you is prohibited. ------------------------------------------------------------------------------ Virtualization & Cloud Management Using Capacity Planning Cloud computing makes use of virtualization - but cloud computing also focuses on allowing computing to be delivered as a service. http://www.accelacomm.com/jaw/sfnl/114/51521223/ _______________________________________________ Mzmine-devel mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/mzmine-devel
