Hi Chris,
I fixed this a few hours ago, please update to the latest version. If you find
any other problem, let me know.
Cheers,
Tomas
On Mar 9, 2012, at 5:10 PM, Pudney Chris (ext) GBJH wrote:
G'day,
I got this working with IntelliJ.
I've done some limited testing and got a ClassNotFoundException for
ChemSpider searches indicating that Apache Commons Discovery is missing.
[15:53:02|SEVERE|WorkerThread]: Unhandled exception
java.lang.NoClassDefFoundError:
org/apache/commons/discovery/tools/DiscoverSingleton while processing
task Peak identification of 274.911 using ChemSpider
Database(java.lang.NoClassDefFoundError:
org/apache/commons/discovery/tools/discoversingle...@org.apache.axis.components.logger.LogFactory$1.run(LogFactory.java:45))
java.lang.NoClassDefFoundError:
org/apache/commons/discovery/tools/DiscoverSingleton
A quick comparison of the old lib/ directory with the new
target/MZmine-*/lib/ directory shows the following are missing:
commons-discovery
jcommon-xml
ostermillerutils
resolver
saaj
serializer
wsdl4j
xercesSamples
Regards,
Chris.
Hi Chris, Sandra, everyone else,
As I mentioned previously, I have switched the MZmine build system from ant to
maven. I am committing the changes at the moment.
It seems to work fine, but there might still be hidden problems, so please be
careful when using the trunk over next few days.
One of the required changes was to move the src/ folder to src/main/java/
(standard folder structure required by maven). I am not sure what this change
might cause when you update your branch sources... so please make sure to keep
a backup of your files, just in case :)
I created a fake maven repository in lib/ to include some of the dependencies
that do not (yet) have their own maven repository.
To build MZmine from scratch, please run 'mvn package'.
The build should appear in the target/MZmine-version/ folder.
So far I tried using Eclipse and it seems to have a reasonably good integration
of maven.
Let me know if you have any other questions.
Cheers,
Tomas
===============================================
Tomas Pluskal
G0 Cell Unit, Okinawa Institute of Science and Technology Graduate University
1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
TEL: +81-98-966-8684
This message may contain confidential information. If you are not the
designated recipient, please notify the sender immediately, and delete the
original and any copies. Any use of the message by you is prohibited.
------------------------------------------------------------------------------
Virtualization & Cloud Management Using Capacity Planning
Cloud computing makes use of virtualization - but cloud computing
also focuses on allowing computing to be delivered as a service.
http://www.accelacomm.com/jaw/sfnl/114/51521223/
_______________________________________________
Mzmine-devel mailing list
Mzmine-devel@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/mzmine-devel
===============================================
Tomas Pluskal
G0 Cell Unit, Okinawa Institute of Science and Technology Graduate University
1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
TEL: +81-98-966-8684
------------------------------------------------------------------------------
Virtualization & Cloud Management Using Capacity Planning
Cloud computing makes use of virtualization - but cloud computing
also focuses on allowing computing to be delivered as a service.
http://www.accelacomm.com/jaw/sfnl/114/51521223/
_______________________________________________
Mzmine-devel mailing list
Mzmine-devel@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/mzmine-devel
