Dear Hiromasa,
Could you send me an example of such file?
Also, which MZmine version are you using?
Cheers,
Tomas
On Mar 9, 2012, at 5:19 PM, Hirogoec wrote:
Hi!
Follow up info.
I noticed that MZmine 2 can not open some mzML files processed by
msconvert, even when msconvert seemed to work normally.
My data contain alternate positive and negative MS1 scans over the whole
elution time, and in addition, MS2 and MS3 scans of one polarity desired
during a certain reterntion time window (event time).
In the test cases, MZmine 2 can open mzML files that contain only MS1 data
of either polarity and MS1-MS3 data in the negative ion mode, but cannot
open a mzML file containing MS1-MS3 data in the positive ion mode
[SEVERE|WorkerThread]: Task error: Error parsing mzML:
java.lang.NullPointerException (null:-1)].. openMS can open the same file
again.
Please let me know which parts of the mzML file structure I should check to
make sure why these happen.
Best regards
Hiro
*************************************
Hiromasa Tojo
hirog...@hotmail.com<mailto:hirog...@hotmail.com>
Dept. of Biochemistry and Molecular Biology
Osaka University Graduate School of Medicine
2-2 Yamadaoka, Suita, Osaka 565-0871,
JAPAN
ht...@mr-mbio.med.osaka-u.ac.jp
Tel: +81-6-6879-3427
Fax: +81-6-6879-3428
*************************************
--------------------------------------------------
From: "gegoe" <ge...@psb.vib-ugent.be>
Sent: Friday, March 09, 2012 2:46 AM
To: <mzmine-devel@lists.sourceforge.net>
Subject: Re: [Mzmine-devel] how to extract positive and negative MS1 scan
data separately from a single Thermo raw file that contains MS1 data in both
positive and negative modes.
Hi, I have the same problem, ok, for the msconvertor, but how to do it??
Any succes, or anyone can tell me how to do it?
cheers,
geert.
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===============================================
Tomas Pluskal
G0 Cell Unit, Okinawa Institute of Science and Technology Graduate University
1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
TEL: +81-98-966-8684
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Virtualization & Cloud Management Using Capacity Planning
Cloud computing makes use of virtualization - but cloud computing
also focuses on allowing computing to be delivered as a service.
http://www.accelacomm.com/jaw/sfnl/114/51521223/
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