Any luck :)?
Cheers, geert.
Tomas Pluskal wrote:
Please send also the Peak list file that you used for the targeted
peak detection.
By the way, I could import your raw file into MZmine without problems.
Tomas
On Apr 12, 2012, at 4:42 PM, Geert Goeminne wrote:
Yes, of course, hope you can unzip this?
carrot.zip
cheers, geert
Hi Geert,
Can you send us the raw files that demonstrate the problems you
described?
Cheers,
Tomas
On Apr 12, 2012, at 1:22 AM, Geert Goeminne wrote:
Dear,
I was trying to use the targeted peak detection, but i don't get
good results at all.
In attachment you can find an example:
I try to look for mass 537.5 (on a nominal MS detection system, LTQ
from Thermo), if i make an XIC chromatogram for that mass range i
have 2 beautiful peaks.
But, if i use the targeted peak detection (with a window of 1 m/z or
1000 ppm), i don't get a very nice results as you can see on the
second page, it seems like the parameters were not accepted and the
window of the target mass is too small (from 537.659 to 537.745).
How come these values are used instead of the range that i have
submitted?
Secondly, i have problems with opening raw data files in positive
mode, i get no signal at all when trying to open the raw file, but
when i convert it to a cdf file i do get a signal, and if i convert
that file back to a raw file, i also get a signal.
It seems like with the original file there is some information
missing for Mzmine to be able to start reading the file, is this
something you have experienced before?
Thank you for your answer,
Cheers,
Geert.
--
==================================================================
Geert Goeminne, Ing.
Tel:+32 (0)9 331 38 79 or (0)9 331 38 85 fax:+32
(0)9 3313809
VIB Department of Plant Systems Biology, Ghent University
Technologiepark 927, 9052 Gent, BELGIUM
ge...@psb.vib-ugent.be http://www.psb.vib-ugent.be
==================================================================
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===============================================
Tomas Pluskal
G0 Cell Unit, Okinawa Institute of Science and Technology Graduate
University
1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
TEL: +81-98-966-8684
--
==================================================================
Geert Goeminne, Ing.
Tel:+32 (0)9 331 38 79 or (0)9 331 38 85 fax:+32
(0)9 3313809
VIB Department of Plant Systems Biology, Ghent University
Technologiepark 927, 9052 Gent, BELGIUM
ge...@psb.vib-ugent.be http://www.psb.vib-ugent.be
==================================================================
<carrot.zip>
===============================================
Tomas Pluskal
G0 Cell Unit, Okinawa Institute of Science and Technology Graduate
University
1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
TEL: +81-98-966-8684
--
==================================================================
Geert Goeminne, Ing.
Tel:+32 (0)9 331 38 79 or (0)9 331 38 85 fax:+32
(0)9 3313809
VIB Department of Plant Systems Biology, Ghent University
Technologiepark 927, 9052 Gent, BELGIUM
ge...@psb.vib-ugent.be http://www.psb.vib-ugent.be
==================================================================
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