G'day, No you don't have to do anything to the .BAT file to get Java3D working, what you must do is install Java3D as a Java "extension".
There are a couple of posts on the mzmine-devel list by Mark Earll that illustrate how this is done: https://sourceforge.net/mailarchive/message.php?msg_id=28257025 https://sourceforge.net/mailarchive/message.php?msg_id=29145581 Essentially, you must download the correct Java3D for the version of Java that you are using (from http://java3d.java.net/binary-builds.html). If you have 32-bit Java then download j3d-XXX-windows-i586.zip, if you have 64-bit Java then download j3d-XXX-windows-amd64.zip. Once downloaded and unpacked, determine where Java is installed (in your case C:\Program Files (x86)\Java\jre1.6.0) - let's call this JRE_HOME. Then copy the Java3D JAR files to JRE_HOME\lib\ext and the DLL files to the JRE_HOME\bin. Regards, Chris. On 04/05/12 05:30, Andrew Newsome wrote: > One more problem... > I have installed Java 3D successfully, but MZMine does not recognize > it - when I try to use the 3D data visualization, I get script that > Java 3D is not installed. Is there a command line to add to the bat > file so the program will recognize Java 3D? How shall I direct it? > In the Java 3D folder, there is not executable file. Only .dll files. > > Great program! Thanks so much! > Andrew > > On Thu, May 3, 2012 at 8:10 AM, Andrew Newsome <anew...@gmail.com > <mailto:anew...@gmail.com>> wrote: > > It works! Thanks. > > On Thu, May 3, 2012 at 3:13 AM, Pudney Chris (ext) GBJH > <chris.pud...@syngenta.com <mailto:chris.pud...@syngenta.com>> wrote: > > G'day, > > > > First, it was saying JAVA_COMMAND=Java is an invalid command. > > I changed this to direct to the java executable: > > *set JAVA_COMMAND=C:\Program Files > (x86)\Java\jre1.6.0\bin\java * > > Now I get an error that says: *'C:\Program' is not > recognized as an internal or external command. * > > I think the problem is the spaces in your JAVA_COMMAND, try: > > set JAVA_COMMAND="C:\Program Files (x86)\Java\jre1.6.0\bin\java" > > Regards, > Chris. > > This message may contain confidential information. If you are > not the designated recipient, please notify the sender > immediately, and delete the original and any copies. Any use > of the message by you is prohibited. > > > This message may contain confidential information. If you are not the designated recipient, please notify the sender immediately, and delete the original and any copies. Any use of the message by you is prohibited. ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ Mzmine-devel mailing list Mzmine-devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mzmine-devel
