Hi, Thomas,
Thank you very much! I have installed the recommened packages. Following was
the output to the commands.
> .libPaths()
[1] "C:/Program Files/R/R-2.15.1/library"
> packageDescription("ptw")
Package: ptw
Type: Package
Title: Parametric Time Warping
Version: 1.0-4
Date: 2012-07-30
Author: Jan Gerretzen <j.gerret...@science.ru.nl>, Paul Eilers
<p.eil...@erasmusmc.nl>, Hans Wouters, Tom Bloemberg
<t.bloemb...@science.ru.nl>, Ron Wehrens
<ron.wehr...@fmach.it> and The R Development Core Team
Maintainer: Tom Bloemberg <t.bloemb...@science.ru.nl>
Description: Parametric Time Warping aligns patterns, i.e. it aims
to put corresponding features at the same locations. The
algorithm searches for an optimal polynomial describing the
warping. It is possible to align one sample to a reference,
several samples to the same reference, or several samples to
several references. One can choose between calculating
individual warpings, or one global warping for a set of
samples and one reference. Two optimization criteria are
implemented: RMS (Root Mean Square error) and WCC (Weighted
Cross Correlation).
License: GPL (>= 2)
LazyLoad: yes
Repository: CRAN
Date/Publication: 2012-08-08 08:35:53
Packaged: 2012-08-08 08:13:26 UTC; tombloem
Built: R 2.15.1; x86_64-pc-mingw32; 2012-08-08 08:58:01 UTC; windows
-- File: C:/Program Files/R/R-2.15.1/library/ptw/Meta/package.rds
Best wishes
Shao Ch'un
--- 12年10月29日，周一, Tomas Pluskal <plus...@oist.jp> 写道：
发件人: Tomas Pluskal <plus...@oist.jp>
主题: Re: [Mzmine-devel] mzmine problems
收件人: "Developer discussion" <mzmine-devel@lists.sourceforge.net>
抄送: "Zhu" <zhushaoc...@yahoo.cn>
日期: 2012年10月29日,周一,上午11:27
Hi Shao Ch'un,
Did you install all the required packages into R?
Please try running R and tell us the output to the following commands:
.libPaths()
packageDescription("ptw")
Cheers,
Tomas
On Oct 27, 2012, at 10:49 AM, Zhu <zhushaoc...@yahoo.cn> wrote:
> Hi,
> I am Shao Ch'un from China and I am doing metabonics research. I have read
> papers on mzmine 2.10. and I am very interested in the software.I want to
> analyze my data using mzmine 2.10,but some problems make me frustrated when I
> use mzmine 2.10. I am vey sorry to bother you! Followings are detailed
> settings:
> 1. I use MS Windows 7.
> 2. Java SE runtime (JRE) version 7.9 was installed.
> 3. Java3D of latest version was installed.
> 4. R 2.15.1 was installed as recommended in the manual.The path is C:\Program
> Files\R\R-2.15.1.
> When I edited the startup script, I found that R_HOME=C:\Program
> Files\R\R-2.12.0 and R_LIBS_USER=%USERPROFILE%\Documents\R\win-library\2.12.
> So I only replaced R-2.12.0 with 2.15.1 and 2.12 with 2.15. But when I did
> baseline correction (with recommended parameters), R couldnot be launched.
> The attached file is Screenshot of the error.
> Can you help me? If you have time, can you show me the detailed settings for
> mzmine 2.10 on a ppt? Look forward to hear from you!
> Best wishes,
> Shao Ch'un
> Fudan University
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