Hi Shao Ch'un,
That looks fine. Can you also send us the contents of the R directories? Please
run the following commands in the Windows command line:
cd C:\Program Files\R\R-2.15.1
dir
cd %USERPROFILE%\Documents\R\win-library\2.15
dir
Tomas
On Oct 29, 2012, at 9:47 PM, Zhu <zhushaoc...@yahoo.cn> wrote:
> Hi, Thomas,
> Thank you very much! I have installed the recommened packages. Following was
> the output to the commands.
> > .libPaths()
> [1] "C:/Program Files/R/R-2.15.1/library"
> > packageDescription("ptw")
> Package: ptw
> Type: Package
> Title: Parametric Time Warping
> Version: 1.0-4
> Date: 2012-07-30
> Author: Jan Gerretzen <j.gerret...@science.ru.nl>, Paul Eilers
> <p.eil...@erasmusmc.nl>, Hans Wouters, Tom Bloemberg
> <t.bloemb...@science.ru.nl>, Ron Wehrens
> <ron.wehr...@fmach.it> and The R Development Core Team
> Maintainer: Tom Bloemberg <t.bloemb...@science.ru.nl>
> Description: Parametric Time Warping aligns patterns, i.e. it aims
> to put corresponding features at the same locations. The
> algorithm searches for an optimal polynomial describing the
> warping. It is possible to align one sample to a reference,
> several samples to the same reference, or several samples to
> several references. One can choose between calculating
> individual warpings, or one global warping for a set of
> samples and one reference. Two optimization criteria are
> implemented: RMS (Root Mean Square error) and WCC (Weighted
> Cross Correlation).
> License: GPL (>= 2)
> LazyLoad: yes
> Repository: CRAN
> Date/Publication: 2012-08-08 08:35:53
> Packaged: 2012-08-08 08:13:26 UTC; tombloem
> Built: R 2.15.1; x86_64-pc-mingw32; 2012-08-08 08:58:01 UTC; windows
> -- File: C:/Program Files/R/R-2.15.1/library/ptw/Meta/package.rds
> Best wishes
> Shao Ch'un
>
>
> --- 12年10月29日，周一, Tomas Pluskal <plus...@oist.jp> 写道：
>
> 发件人: Tomas Pluskal <plus...@oist.jp>
> 主题: Re: [Mzmine-devel] mzmine problems
> 收件人: "Developer discussion" <mzmine-devel@lists.sourceforge.net>
> 抄送: "Zhu" <zhushaoc...@yahoo.cn>
> 日期: 2012年10月29日,周一,上午11:27
>
> Hi Shao Ch'un,
>
> Did you install all the required packages into R?
>
> Please try running R and tell us the output to the following commands:
>
> .libPaths()
> packageDescription("ptw")
>
> Cheers,
>
> Tomas
>
> On Oct 27, 2012, at 10:49 AM, Zhu <zhushaoc...@yahoo.cn> wrote:
>
> > Hi,
> > I am Shao Ch'un from China and I am doing metabonics research. I have read
> > papers on mzmine 2.10. and I am very interested in the software.I want to
> > analyze my data using mzmine 2.10,but some problems make me frustrated when
> > I use mzmine 2.10. I am vey sorry to bother you! Followings are detailed
> > settings:
> > 1. I use MS Windows 7.
> > 2. Java SE runtime (JRE) version 7.9 was installed.
> > 3. Java3D of latest version was installed.
> > 4. R 2.15.1 was installed as recommended in the manual.The path is
> > C:\Program Files\R\R-2.15.1.
> > When I edited the startup script, I found that R_HOME=C:\Program
> > Files\R\R-2.12.0 and
> > R_LIBS_USER=%USERPROFILE%\Documents\R\win-library\2.12. So I only replaced
> > R-2.12.0 with 2.15.1 and 2.12 with 2.15. But when I did baseline correction
> > (with recommended parameters), R couldnot be launched. The attached file is
> > Screenshot of the error.
> > Can you help me? If you have time, can you show me the detailed settings
> > for mzmine 2.10 on a ppt? Look forward to hear from you!
> > Best wishes,
> > Shao Ch'un
> > Fudan University
> > <error.jpg>------------------------------------------------------------------------------
> > WINDOWS 8 is here.
> > Millions of people. Your app in 30 days.
> > Visit The Windows 8 Center at Sourceforge for all your go to resources.
> > http://windows8center.sourceforge.net/
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> > Mzmine-devel mailing list
> > Mzmine-devel@lists.sourceforge.net
> > https://lists.sourceforge.net/lists/listinfo/mzmine-devel
>
> ===============================================
> Tomáš Pluskal
> G0 Cell Unit, Okinawa Institute of Science and Technology Graduate University
> 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
> WWW: https://groups.oist.jp/g0
> TEL: +81-98-966-8684
> Fax: +81-98-966-2890
> ------------------------------------------------------------------------------
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> Your idea - your app - 30 days.
> Get started!
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===============================================
Tomáš Pluskal
G0 Cell Unit, Okinawa Institute of Science and Technology Graduate University
1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
WWW: https://groups.oist.jp/g0
TEL: +81-98-966-8684
Fax: +81-98-966-2890
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