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G'day, Kostas, firstly you need to make sure that certain packages are installed in R for the CAMERA and baseline correction modules to work, see the MZmine manual: https://docs.google.com/document/pub?id=1JtdNwp1y6wz_Boz8qVGESH-kSrMhcGaJWR18iGmhstU#h.1pys305nsw0o Please start R and run the following commands: install.packages(c("rJava", "ptw", "gplots")) source("http://bioconductor.org/biocLite.R") biocLite("xcms") biocLite("CAMERA") Then you need to configure your start-up script correctly. Please start R and send us the output from the following commands: .libPaths() .packageDescription("ptw") Regards, Chris. ----- Dear MZmine Developers team:
I am experiencing problems with the settings in the
startMZmine script.
It seems I cannot figure out how to set the paths to R for
Baseline corrections and CAMERA searches. R is install in this
PC.
Please find attached screenshots and the startMZmine script.
Any help would be greatly appreciated.
Thank you
Kind Regards
Kostas
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