Hi,
I was trying to run MZmine with command line on a Linux machine. It is a
remote machine and it does not support X server. Therefore, I prepared the
input xml file on a local computer and copied it over to the Linux machine.
I did "startMZmine_Linux.sh myfile.xml" and got the following error. Is
java VM really needed for command-line mode? If not is there a way to
disable it? If java VM is indeed needed, how do I increase the heap size?
Error occurred during initialization of VM
Could not reserve enough space for object heap
Error: Could not create the Java Virtual Machine.
Error: A fatal exception has occurred. Program will exit.
Error occurred during initialization of VM
Could not reserve enough space for object heap
Error: Could not create the Java Virtual Machine.
Error: A fatal exception has occurred. Program will exit.
Another question is, does this startMZmine script execute all three
steps: mass detection, chromatogram building and perk deconvolution? Is it
possible to manually run them one by one (by option/flag)?
Thanks,
DJ
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