Hi Sabine,
Not sure what the source of your problem might be. Can you test using other
software that depends on MSFileReader, such as ProteoWizard?
http://proteowizard.sourceforge.net/
E.g. try using ProteoWizard's msconvert tool to convert RAW file into MZXML.
Tomas
On Apr 8, 2013, at 4:58 PM, "Ortmann, Sabine
(sabine.ortm...@uni-graz.at<mailto:sabine.ortm...@uni-graz.at>)"
<sabine.ortm...@uni-graz.at<mailto:sabine.ortm...@uni-graz.at>> wrote:
Hi Tomas,
I have installed the 32-bit version of the MSFileReader.
Best regards,
Sabine
________________________________________
Von: Tomas Pluskal [plus...@oist.jp<mailto:plus...@oist.jp>]
Gesendet: Samstag, 30. März 2013 10:57
An: Developer discussion
Cc: Ortmann, Sabine
(sabine.ortm...@uni-graz.at<mailto:sabine.ortm...@uni-graz.at>)
Betreff: Re: [Mzmine-devel] raw data import
Hi Sabine,
Did you install 32-bit or 64-bit version of the MSFileReader libraries (or
both)?
You need to have the 32-bit version installed in order to use it with MZmine,
even on 64-bit OS.
Best regards,
Tomas
On Mar 28, 2013, at 9:44 PM, "Ortmann, Sabine
(sabine.ortm...@uni-graz.at<mailto:sabine.ortm...@uni-graz.at><mailto:sabine.ortm...@uni-graz.at>)"
<sabine.ortm...@uni-graz.at<mailto:sabine.ortm...@uni-graz.at><mailto:sabine.ortm...@uni-graz.at>>
wrote:
Hi Tomas,
OS: Windows 7, 64bit
Java: java version 1.7.0
MSFileReader 2.2.62
R 2.15.3
HEAP_SIZE: didn't find it (where do I find that?) but I didn't change the
default values (RAM: 8GB)
These are the steps I took:
Raw data methods
Raw data import
import .raw data file (from Xcalibur)
Error of task Opening file - I have send you the screenshot in the attachments
I hope this is all the information you need!
Best regards,
Sabine
________________________________________
Von: Tomas Pluskal
[plus...@oist.jp<mailto:plus...@oist.jp><mailto:plus...@oist.jp>]
Gesendet: Donnerstag, 28. März 2013 11:29
An: Developer discussion
Cc: Ortmann, Sabine
(sabine.ortm...@uni-graz.at<mailto:sabine.ortm...@uni-graz.at><mailto:sabine.ortm...@uni-graz.at>)
Betreff: Re: [Mzmine-devel] raw data import
Hi Sabine,
Please follow the "How to report problems with MZmine 2" section of the manual:
https://docs.google.com/document/pub?id=1JtdNwp1y6wz_Boz8qVGESH-kSrMhcGaJWR18iGmhstU#h.ieegr3ccm53e
Best regards,
Tomas
On Mar 27, 2013, at 10:40 PM, "Ortmann, Sabine
(sabine.ortm...@uni-graz.at<mailto:sabine.ortm...@uni-graz.at><mailto:sabine.ortm...@uni-graz.at><mailto:sabine.ortm...@uni-graz.at>)"
<sabine.ortm...@uni-graz.at<mailto:sabine.ortm...@uni-graz.at><mailto:sabine.ortm...@uni-graz.at><mailto:sabine.ortm...@uni-graz.at>>
wrote:
I have installed the MSFileReader but I still get the following message when I
want to import a raw data file:
"java.io.IOException: Unable to initialize RAW file object, have you installed
MSFileReader? (Xcalibur RawFileReaderTask.java.192)"
Do you have a solution to that?
------------------------------------------------------------------------------
Own the Future-Intel® Level Up Game Demo Contest 2013
Rise to greatness in Intel's independent game demo contest.
Compete for recognition, cash, and the chance to get your game
on Steam. $5K grand prize plus 10 genre and skill prizes.
Submit your demo by 6/6/13. http://p.sf.net/sfu/intel_levelupd2d
_______________________________________________
Mzmine-devel mailing list
Mzmine-devel@lists.sourceforge.net<mailto:Mzmine-devel@lists.sourceforge.net><mailto:Mzmine-devel@lists.sourceforge.net><mailto:Mzmine-devel@lists.sourceforge.net>
https://lists.sourceforge.net/lists/listinfo/mzmine-devel
===============================================
Tomas Pluskal
G0 Cell Unit, Okinawa Institute of Science and Technology Graduate University
1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
WWW: https://groups.oist.jp/g0
TEL: +81-98-966-8684
Fax: +81-98-966-2890
<Error of task Opening
file.docx>------------------------------------------------------------------------------
Own the Future-Intel® Level Up Game Demo Contest 2013
Rise to greatness in Intel's independent game demo contest.
Compete for recognition, cash, and the chance to get your game
on Steam. $5K grand prize plus 10 genre and skill prizes.
Submit your demo by 6/6/13.
http://p.sf.net/sfu/intel_levelupd2d_______________________________________________
Mzmine-devel mailing list
Mzmine-devel@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/mzmine-devel
===============================================
Tomas Pluskal
G0 Cell Unit, Okinawa Institute of Science and Technology Graduate University
1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
WWW: https://groups.oist.jp/g0
TEL: +81-98-966-8684
Fax: +81-98-966-2890
------------------------------------------------------------------------------
Minimize network downtime and maximize team effectiveness.
Reduce network management and security costs.Learn how to hire
the most talented Cisco Certified professionals. Visit the
Employer Resources Portal
http://www.cisco.com/web/learning/employer_resources/index.html
_______________________________________________
Mzmine-devel mailing list
Mzmine-devel@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/mzmine-devel
===============================================
Tomas Pluskal
G0 Cell Unit, Okinawa Institute of Science and Technology Graduate University
1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
WWW: https://groups.oist.jp/g0
TEL: +81-98-966-8684
Fax: +81-98-966-2890
------------------------------------------------------------------------------
Minimize network downtime and maximize team effectiveness.
Reduce network management and security costs.Learn how to hire
the most talented Cisco Certified professionals. Visit the
Employer Resources Portal
http://www.cisco.com/web/learning/employer_resources/index.html
_______________________________________________
Mzmine-devel mailing list
Mzmine-devel@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/mzmine-devel
