Hi Tomas, I tried to use ProteoWizard's msconvert but it didn't work. After that I uninstalled MSFileReader once more and installed it again. I did that before and it didn't help but apparently this time it worked....
However, thanks for your help!! Sabine ________________________________________ Von: Tomas Pluskal [plus...@oist.jp] Gesendet: Montag, 08. April 2013 10:22 An: Developer discussion Cc: Ortmann, Sabine (sabine.ortm...@uni-graz.at) Betreff: Re: [Mzmine-devel] raw data import Hi Sabine, Not sure what the source of your problem might be. Can you test using other software that depends on MSFileReader, such as ProteoWizard? http://proteowizard.sourceforge.net/ E.g. try using ProteoWizard's msconvert tool to convert RAW file into MZXML. Tomas On Apr 8, 2013, at 4:58 PM, "Ortmann, Sabine (sabine.ortm...@uni-graz.at<mailto:sabine.ortm...@uni-graz.at>)" <sabine.ortm...@uni-graz.at<mailto:sabine.ortm...@uni-graz.at>> wrote: Hi Tomas, I have installed the 32-bit version of the MSFileReader. Best regards, Sabine ________________________________________ Von: Tomas Pluskal [plus...@oist.jp<mailto:plus...@oist.jp>] Gesendet: Samstag, 30. März 2013 10:57 An: Developer discussion Cc: Ortmann, Sabine (sabine.ortm...@uni-graz.at<mailto:sabine.ortm...@uni-graz.at>) Betreff: Re: [Mzmine-devel] raw data import Hi Sabine, Did you install 32-bit or 64-bit version of the MSFileReader libraries (or both)? You need to have the 32-bit version installed in order to use it with MZmine, even on 64-bit OS. Best regards, Tomas On Mar 28, 2013, at 9:44 PM, "Ortmann, Sabine (sabine.ortm...@uni-graz.at<mailto:sabine.ortm...@uni-graz.at><mailto:sabine.ortm...@uni-graz.at>)" <sabine.ortm...@uni-graz.at<mailto:sabine.ortm...@uni-graz.at><mailto:sabine.ortm...@uni-graz.at>> wrote: Hi Tomas, OS: Windows 7, 64bit Java: java version 1.7.0 MSFileReader 2.2.62 R 2.15.3 HEAP_SIZE: didn't find it (where do I find that?) but I didn't change the default values (RAM: 8GB) These are the steps I took: Raw data methods Raw data import import .raw data file (from Xcalibur) Error of task Opening file - I have send you the screenshot in the attachments I hope this is all the information you need! Best regards, Sabine ________________________________________ Von: Tomas Pluskal [plus...@oist.jp<mailto:plus...@oist.jp><mailto:plus...@oist.jp>] Gesendet: Donnerstag, 28. März 2013 11:29 An: Developer discussion Cc: Ortmann, Sabine (sabine.ortm...@uni-graz.at<mailto:sabine.ortm...@uni-graz.at><mailto:sabine.ortm...@uni-graz.at>) Betreff: Re: [Mzmine-devel] raw data import Hi Sabine, Please follow the "How to report problems with MZmine 2" section of the manual: https://docs.google.com/document/pub?id=1JtdNwp1y6wz_Boz8qVGESH-kSrMhcGaJWR18iGmhstU#h.ieegr3ccm53e Best regards, Tomas On Mar 27, 2013, at 10:40 PM, "Ortmann, Sabine (sabine.ortm...@uni-graz.at<mailto:sabine.ortm...@uni-graz.at><mailto:sabine.ortm...@uni-graz.at><mailto:sabine.ortm...@uni-graz.at>)" <sabine.ortm...@uni-graz.at<mailto:sabine.ortm...@uni-graz.at><mailto:sabine.ortm...@uni-graz.at><mailto:sabine.ortm...@uni-graz.at>> wrote: I have installed the MSFileReader but I still get the following message when I want to import a raw data file: "java.io.IOException: Unable to initialize RAW file object, have you installed MSFileReader? (Xcalibur RawFileReaderTask.java.192)" Do you have a solution to that? ------------------------------------------------------------------------------ Own the Future-Intel® Level Up Game Demo Contest 2013 Rise to greatness in Intel's independent game demo contest. Compete for recognition, cash, and the chance to get your game on Steam. $5K grand prize plus 10 genre and skill prizes. Submit your demo by 6/6/13. http://p.sf.net/sfu/intel_levelupd2d _______________________________________________ Mzmine-devel mailing list Mzmine-devel@lists.sourceforge.net<mailto:Mzmine-devel@lists.sourceforge.net><mailto:Mzmine-devel@lists.sourceforge.net><mailto:Mzmine-devel@lists.sourceforge.net> https://lists.sourceforge.net/lists/listinfo/mzmine-devel =============================================== Tomas Pluskal G0 Cell Unit, Okinawa Institute of Science and Technology Graduate University 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan WWW: https://groups.oist.jp/g0 TEL: +81-98-966-8684 Fax: +81-98-966-2890 <Error of task Opening file.docx>------------------------------------------------------------------------------ Own the Future-Intel® Level Up Game Demo Contest 2013 Rise to greatness in Intel's independent game demo contest. Compete for recognition, cash, and the chance to get your game on Steam. $5K grand prize plus 10 genre and skill prizes. Submit your demo by 6/6/13. http://p.sf.net/sfu/intel_levelupd2d_______________________________________________ Mzmine-devel mailing list Mzmine-devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mzmine-devel =============================================== Tomas Pluskal G0 Cell Unit, Okinawa Institute of Science and Technology Graduate University 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan WWW: https://groups.oist.jp/g0 TEL: +81-98-966-8684 Fax: +81-98-966-2890 ------------------------------------------------------------------------------ Minimize network downtime and maximize team effectiveness. Reduce network management and security costs.Learn how to hire the most talented Cisco Certified professionals. Visit the Employer Resources Portal http://www.cisco.com/web/learning/employer_resources/index.html _______________________________________________ Mzmine-devel mailing list Mzmine-devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mzmine-devel =============================================== Tomas Pluskal G0 Cell Unit, Okinawa Institute of Science and Technology Graduate University 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan WWW: https://groups.oist.jp/g0 TEL: +81-98-966-8684 Fax: +81-98-966-2890 ------------------------------------------------------------------------------ Minimize network downtime and maximize team effectiveness. Reduce network management and security costs.Learn how to hire the most talented Cisco Certified professionals. Visit the Employer Resources Portal http://www.cisco.com/web/learning/employer_resources/index.html _______________________________________________ Mzmine-devel mailing list Mzmine-devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mzmine-devel
