Dear Tomas,
Thank you very much for quick response. When I am running MzMine with the
whole sample set (as I mentioned before 8*6 =48) as one project, i came
across the java out of memory error message (I have pasted the detail at
the end of this email). Will it be solved if i increase heap size? But
unfortunately I do not know how to do it in Mac, so I have not adjusted the
default heap size in MzMine during installation. I am running this program
in mac OS X lion with 2.5 GZ processor and 4 GB memory.
Can you pls. tell me what is the maximum heap size I can allocate if I want
to run Mzmine for same samples in Window 7 with 6 GB memory?
Thanks a lot in advance for your suggestion.
jamuna
[5:26:42|SEVERE|WorkerThread]: Unhandled exception
java.lang.OutOfMemoryError: Java heap space while processing task Detecting
chromatograms in hlc_sm8.CDF hlc_filtered
hlc_baseline-corrected(java.lang.OutOfMemoryError: Java heap
sp...@java.util.HashMap.resize(HashMap.java:462))
java.lang.OutOfMemoryError: Java heap space
at java.util.HashMap.resize(HashMap.java:462)
at java.util.LinkedHashMap.addEntry(LinkedHashMap.java:414)
at java.util.HashMap.put(HashMap.java:385)
at java.util.HashSet.add(HashSet.java:200)
at
net.sf.mzmine.modules.masslistmethods.chromatogrambuilder.HighestDataPointConnector.addScan(HighestDataPointConnector.java:122)
at
net.sf.mzmine.modules.masslistmethods.chromatogrambuilder.ChromatogramBuilderTask.run(ChromatogramBuilderTask.java:150)
at
net.sf.mzmine.taskcontrol.impl.WorkerThread.run(WorkerThread.java:60)
On Wed, Jun 19, 2013 at 10:25 PM, Tomas Pluskal <plus...@oist.jp> wrote:
> Hi Jamuna,
>
> Sorry, but there is no feature for that in MZmine. In our lab we export
> all our data from MZmine into a big SQL database and we align the peaks in
> the database. But this is an in-house developed solution.
>
> Best regards,
>
> Tomas
>
>
> On Jun 19, 2013, at 11:24 PM, jamuna risal <jri...@gmail.com> wrote:
>
> Hi,
>
> I am new to MzMine. i have generated peak lists for each treatment (n=6)
> and saved in different projects. Since I have eight projects and need to
> compare between each combination, keeping them together in the single
> project would be too large to work. Is there any possibility, I bring
> forward two Mzmine projects together and do comparisons? OR if i export
> data to excel from each project, can anybody give me an idea how to align
> data from two excel file for comparison?
>
> Much appreciation for any suggestion. Thank you.
>
>
>
> --
> Jamuna Risal Paudel
>
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>
> ===============================================
> Tomas Pluskal
> G0 Cell Unit, Okinawa Institute of Science and Technology Graduate
> University
> 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
> WWW: https://groups.oist.jp/g0
> TEL: +81-98-966-8684
> Fax: +81-98-966-2890
>
>
--
Jamuna Risal Paudel
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