Dear Tomas, Could you send me the attachment file or the raw data. This error is seems to be associated with the first scan, which may contain no data. Of course I can solve this, but I would like to confirm or know precisely the data to provide a general solution. Regards, vt ______________________________________ Dr. Victor Manuel Treviño Alvarado Profesor-Investigador, SNI - 1 Cátedra de Bioinformática Tecnológico de Monterrey, Campus Monterrey CITES, 304, Tel. 8888 2045 Aulas 7-421, Tel. 52-(81) 8358 2000 ext. 4536-103 http://homepages.mty.itesm.mx/vtrevino http://www.itesm.mx
El contenido de este mensaje de datos no se considera oferta, propuesta o acuerdo, sino hasta que sea confirmado en documento por escrito que contenga la firma autógrafa del apoderado legal del ITESM. El contenido de este mensaje de datos es confidencial y se entiende dirigido y para uso exclusivo del destinatario, por lo que no podrá distribuirse y/o difundirse por ningún medio sin la previa autorización del emisor original. Si usted no es el destinatario, se le prohíbe su utilización total o parcial para cualquier fin. The content of this data transmission must not be considered an offer, proposal, understanding or agreement unless it is confirmed in a document signed by a legal representative of ITESM. The content of this data transmission is confidential and is intended to be delivered only to the addressees. Therefore, it shall not be distributed and/or disclosed through any means without the authorization of the original sender. If you are not the addressee, you are forbidden from using it, either totally or partially, for any purpose. On Tue Aug 12, 2014, at 3:04 AM, Tomas Pluskal <plus...@oist.jp> wrote: > Hi Gauthier, > > Thank you for the report! > > Victor, can you take a look at this? It seems the error happens in the very > beginning of the task: > minMasa = mzV[0].getMZ(); > Perhaps the data contains a scan with no data points, and that causes the > exception. > > Cheers, > > Tomas > > > > On Aug 12, 2014, at 16:48, Gauthier Boaglio <gauthier.boag...@gmail.com> > wrote: > >> Hi Tomas, >> >> To accomplish my duty, here is a bug I get with the GridMass - 2D module >> (hope this is not a duplicate of any anterior report/fix). Usually, I would >> have preferred to provide a fix, rather than just reporting, but I really >> need to be far from keyboard for a moment... >> >> [9:26:25|INFO|GridMassTask]: Started GRIDMASS v1.0 [Apr-09-2014] on >> T0_128_V3_221112.cdf >> [9:26:25|SEVERE|WorkerThread]: Unhandled exception >> java.lang.ArrayIndexOutOfBoundsException: 0 while processing task Detecting >> chromatograms (RT) in >> T0_128_V3_221112.cdf(java.lang.ArrayIndexOutOfBoundsException: >> 0...@net.sf.mzmine.modules.rawdatamethods.peakpicking.gridmass.gridmasstask.run(GridMassTask.java:150)) >> java.lang.ArrayIndexOutOfBoundsException: 0 >> at >> net.sf.mzmine.modules.rawdatamethods.peakpicking.gridmass.GridMassTask.run(GridMassTask.java:150) >> at net.sf.mzmine.taskcontrol.impl.WorkerThread.run(WorkerThread.java:60) >> >> Attachment: The ".mzmine" project file containing the raw dataset used for >> testing, as well as the parameters used to get the error (even if I had the >> same error for all the combinations of parameters I tried with the module). >> >> Note: The raw dataset I used, is one of those I systematically use, since >> I'm working on/with MZmine2. So the input data ain't the cause... >> >> >> Cheers >> Gaut >> >> > > =============================================== > Tomas Pluskal > G0 Cell Unit, Okinawa Institute of Science and Technology Graduate University > 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan > WWW: https://groups.oist.jp/g0 > TEL: +81-98-966-8684 > Fax: +81-98-966-2890 > ------------------------------------------------------------------------------ _______________________________________________ Mzmine-devel mailing list Mzmine-devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mzmine-devel
