Hi Tomas,
I understand that this is important to have it work this way for better
compatibility in Headless Mode, but wouldn't it be more practical to
have the choice of using pattern or using the result of the previous
step (as it used to be), at least in GUI mode? That was very handy that
way, because we were able to run several times a batch in the same
session/project on different input files (string pattern - regex -
doesn't allow to make the distinction between 2 different runs of a
given batch). A simple suggestion: couldn't we restore that possibility
and in some way (for example, adding some sort of predefined tags to the
RawDataFilesComponent/PeakListsComponent), such that we can, for example
say: "${previous.step}" as a valid/recognized "pattern"/entry. Or,
another way could be to give the possibility to prepend a user define
prefix to the resulting file/list of the result of the first step (which
would be used recursiveley throug the steps, such that we don't have to
update every RawDataFilesParameter/PeakListsParameter, for every single
step, each time we run the batch one more time in the same project). As
a simple user, I would prefer to have "${previous.step}" recognized as a
valid pattern entry. As a developer, I understand that this can make the
code a bit more complicated/less flexible (since we would have to
restore the ability of a Task to remember what objects it actually
generated).
What do you say?
Best
Gaut
On 12/16/2014 01:40 AM, Tomas Pluskal wrote:
> - I updated the RawDataFileParameter and PeakListParameter (selection
> of inputs of individual modules) to be real, visible parameters with
> their own selection components. In these components, users can set
> wildcards (*) to apply methods to certain groups of data files or peak
> lists. This also changes the philosophy of the batch mode. In previous
> versions, the batch mode steps were always applied to the output of
> the previous step. Now, the user can setup what each batch mode step
> is actually applied to. This change is still a work in progress, as
> some modules will have to be updated to reflect the new philosophy
> (e.g., the spectra visualizer now complains when multiple raw data
> files are selected - but these are cosmetic issues).
--
Gauthier BOAGLIO
CEFE - UMR 5175
1919 route de Mende
F-34293 Montpellier cedex 5
Tel: +33/0 4 67 61 32 15
Fax: +33/0 4 67 61 33 36
email: [email protected]
www:
http://www.cefe.cnrs.fr/en/evolutionary-ecology-and-epidemiology/gauthier-boaglio
http://www.evolepid.org/people.php?name=boaglio
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