Hi Thomas,
I added a new method escapeStringForCSV to CSVExportTask. The purpose of this
method is to strip control characters from the exported strings (particularly
things like EOL \n). It basically calls inputString.replaceAll("[\\p{Cntrl}]",
" “);
It is possible that some peak identity data might contain such special
characters. I recommend to also check your mzTab export module how it behaves
in such case. Perhaps you might also need to remove any special characters
before exporting the strings. I mean, for example, what happens if the peak
identity contains the \t (tab) character? Maybe the jmztab library can handle
this, but we should make sure it works.
Cheers,
Tomas
===============================================
Tomas Pluskal
G0 Cell Unit, Okinawa Institute of Science and Technology Graduate University
1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
WWW: https://groups.oist.jp/g0
TEL: +81-98-966-8684
Fax: +81-98-966-2890
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