I changed the terminology as agreed - please check to see that you agree with the changes and that I haven't missed something.
I noticed that "Base peak intensity" is selected as the default "Plot type" and that the XIC (base peak) will be shown if you use the show (quick) option on a peak in the peak list table. Is this how you prefer it to be or should it be changed so that the "Total ion current" is the default "Plot type" and so that the XIC plot is shown when using the show (quick) option? Best, Thomas -----Original Message----- From: Tomas Pluskal [mailto:plus...@oist.jp] Sent: 26. februar 2015 13:17 To: Developer discussion Subject: Re: [Mzmine-devel] Questions about the XIC plots Sure, go ahead :) Tomas > On Feb 26, 2015, at 5:45 PM, TFRD (Thomas Franck Dyrlund) <t...@steno.dk> > wrote: > > XIC and XIC (base peak) sounds great. So we will go for these? > - Total ion current > - Base peak chromatogram > - XIC > - XIC (base peak) > > Should I make the initial changes which you can then comment on? > > /Thomas > > > From: Tomas Pluskal [mailto:plus...@oist.jp] > Sent: 26. februar 2015 09:38 > To: Developer discussion > Subject: Re: [Mzmine-devel] Questions about the XIC plots > > Hi Thomas, > > I think that we should use these names to follow the IUPAC recommendations: > - Total ion current (or TIC) [= what you refer to as TICsum] > - Base peak chromatogram [= what you refer to as TICmax] > > OK. > > > As for the XIC, then I agree that we have to be able to account for the plot > type (base peak intensity or total ion current). I suggest that we use the > following terminology to make it as clear as possible: > XIC - Total ion current > XIC - Base peak intensity > > Hmm, it feels a bit long and cumbersome. How about assuming that XIC = > XICsum, and calling them XIC XIC (base peak) > > > But if you would rather that we use short names like XICsum and XICmax [or > XIC (Sum) and XIC (Max) ] then let's go for that but then I suggest that we > add (Sum) and (Max) to the plot type names in the parameters. I cannot find a > standard definition of how to distinguish the two XIC plots and I actually > think that many people don't realise that an XIC plot can be generated in two > different ways. > > True. In Thermo Xcalibur, they call the plots "Mass Range" (=XICsum), "TIC" > (=TICsum) and "Base peak" (=XICmax or TICmax depending on the mass range). > > <image001.png> > > Best, > > Tomas > > > =============================================== > Tomas Pluskal > G0 Cell Unit, Okinawa Institute of Science and Technology Graduate > University > 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan > WWW: https://groups.oist.jp/g0 > TEL: +81-98-966-8684 > Fax: +81-98-966-2890 > > ---------------------------------------------------------------------- > -------- Dive into the World of Parallel Programming The Go Parallel > Website, sponsored by Intel and developed in partnership with Slashdot > Media, is your hub for all things parallel software development, from > weekly thought leadership blogs to news, videos, case studies, > tutorials and more. Take a look and join the conversation now. > http://goparallel.sourceforge.net/____________________________________ > ___________ > Mzmine-devel mailing list > Mzmine-devel@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/mzmine-devel =============================================== Tomas Pluskal G0 Cell Unit, Okinawa Institute of Science and Technology Graduate University 1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan WWW: https://groups.oist.jp/g0 TEL: +81-98-966-8684 Fax: +81-98-966-2890 ------------------------------------------------------------------------------ Dive into the World of Parallel Programming The Go Parallel Website, sponsored by Intel and developed in partnership with Slashdot Media, is your hub for all things parallel software development, from weekly thought leadership blogs to news, videos, case studies, tutorials and more. Take a look and join the conversation now. http://goparallel.sourceforge.net/ _______________________________________________ Mzmine-devel mailing list Mzmine-devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mzmine-devel ------------------------------------------------------------------------------ Dive into the World of Parallel Programming The Go Parallel Website, sponsored by Intel and developed in partnership with Slashdot Media, is your hub for all things parallel software development, from weekly thought leadership blogs to news, videos, case studies, tutorials and more. Take a look and join the conversation now. http://goparallel.sourceforge.net/ _______________________________________________ Mzmine-devel mailing list Mzmine-devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mzmine-devel
