Hi Geert,
I can see a few potential problems in your report:
1) MZmine does NOT need to be started in administration mode. In fact, running
it in admin mode leads to the error you encountered ("Error: Could not find or
load main class ...."), because the script is started from a different working
directory in admin mode. You said starting the script as normal user did not
work, but you did not specify why.
2) Although you said you have Java 8 update 40, MZmine is apparently started
with Java 7 update 45 (according to the screenshot you sent). But this should
not be a problem - Java 7 is sufficient to run MZmine.
3) Your R says "no package ‘xcms’ was found" but have you installed these R
packages as described in the MZmine manual? (note that installing these
packages is not required to run MZmine itself, only certain modules)
Best,
Tomas
> On Mar 17, 2015, at 19:42, Cremers Geert <geert.crem...@vito.be> wrote:
>
> Dear,
>
> I am trying to run MzMine on a windows 7 (64-bit) machine.
>
> Running: MZmine-2.13.1
>
> Using R 3.1.2
> Location: C:\Program Files\R\R-3.1.2
> 32bit version: "C:\Program Files\R\R-3.1.2\bin\i386\Rgui.exe"
> 64bit version: "C:\Program Files\R\R-3.1.2\bin\x64\Rgui.exe"
>
> .libPaths()
> Output:
> [1] “C:/Users/cremersg/Documents/R/win-library/3.1”
> [2] “C:/Program Files/R/R-3.1.2/library”
>
> packageDescription("xcms")
> output:
> [1] NA Warning message: In packageDescription(“xcms”) : no package ‘xcms’ was
> found
>
> packageDescription("ptw ")
> output:
> [1] NA Warning message: In packageDescription(“ptw”) : no package ‘ptw’ was
> found
>
> packageDescription("rJava ")
> output:
> [1] NA Warning message: In packageDescription(“rJava”) : no package ‘rJava’
> was found
>
> Java 8 update 40
>
> The steps I took to overcome this problem:
> Started project R to check if it works,
> Read the manual, to see if this error was reported earlier,
> Tried to run the program NOT in administration mode - this does not work –
> need admin mode.
>
>
> In the attached files you can find:
> [1] The error message screenshot
> [2] The startMZmine batch file (converted to TEXT)
>
>
> Hope you can help me resolve the problem,
> Kind regards, Geert
>
> Geert Cremers
> Scheidings- en conversietechnologie (building: 12 - MAN – Milieuanalyses)
> VITO NV | Boeretang 200 | 2400 Mol
> Tel. +32 14 33 50 20 | geert.crem...@vito.be
> <image001.jpg><image002.jpg><image003.jpg><image004.jpg>
>
>
> VITO Disclaimer: http://www.vito.be/e-maildisclaimer <MzMine
> Error.jpg><startMZmine_Windows
> TEXT.txt>------------------------------------------------------------------------------
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===============================================
Tomas Pluskal
G0 Cell Unit, Okinawa Institute of Science and Technology Graduate University
1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
WWW: https://groups.oist.jp/g0
TEL: +81-98-966-8684
Fax: +81-98-966-2890
------------------------------------------------------------------------------
Dive into the World of Parallel Programming The Go Parallel Website, sponsored
by Intel and developed in partnership with Slashdot Media, is your hub for all
things parallel software development, from weekly thought leadership blogs to
news, videos, case studies, tutorials and more. Take a look and join the
conversation now. http://goparallel.sourceforge.net/
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