I have made a pull request for the scripts. Please have a look at the Windows 
script here and let me know which other changes you would like:
https://github.com/mzmine/mzmine2/pull/50

I will make the same changes to the linux and mac scripts once we are happy 
with the updated Windows script.

/Thomas

-----Original Message-----
From: Tomas Pluskal [mailto:plus...@oist.jp] 
Sent: 2. juni 2015 16:12
To: Developer discussion
Subject: Re: [Mzmine-devel] startMZmine scripts

Hi Thomas,

A good idea, although I think the JAVA_COMMAND parameter should be added to the 
top list. In case there are multiple JVMs or if the JVM is located in a 
non-standard place, the user may want to point to a specific java.exe location.

Cheers,

Tomas



> On Jun 2, 2015, at 11:00 PM, TFRD (Thomas Franck Dyrlund) <t...@steno.dk> 
> wrote:
> 
> With the move to Rserve, a lot of the old parameters have now been removed 
> from the start scripts and a lot of new code has been added. But basically 
> the user now only optionally need to change the following three values:
> - HEAP_SIZE
> - MZMINE_STATISTICS
> - TMP_FILE_DIRECTORY
>  
> I therefore suggest a general clean-up of the scripts to make things more 
> clear for the users. I have attached my suggestion for the 
> startMZmine_Windows.bat file where I have changed the following:
>  
> 1.
> Moved the three variables to the top of the scripts to make it easy for the 
> users to see what parameters they can change.
>  
> 2.
> Cleaned the help text in the file.
>  
> 3.
> Added code to delete the temp folder after closing MZmine.
>  
> Please let me know what you think.
>  
> Best,
>  
> Thomas
> <startMZmine_Windows.txt>---------------------------------------------
> --------------------------------- 
> _______________________________________________
> Mzmine-devel mailing list
> Mzmine-devel@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/mzmine-devel

===============================================
Tomas Pluskal
G0 Cell Unit, Okinawa Institute of Science and Technology Graduate University
1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
WWW: https://groups.oist.jp/g0
TEL: +81-98-966-8684
Fax: +81-98-966-2890


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