It looks like this is some kind of bug related to Docker and apparmor. Disabling apparmor makes it go away...
On 09/01/2016 11:11 AM, Alan Robertson wrote: > Hi, > > I've been having trouble with getting Neo4j to start in a docker > image. This image was produced by a Dockerfile which built my software > and installed and ran Neo4j and my tests without any issues. But when > I try and start the resulting image, Neo4j declines to start for > mysterious reasons. The logs from trying to start it are below: > > NEO4J_CONF=/etc/neo4j /usr/share/neo4j/bin/neo4j console > Starting Neo4j. > 2016-09-01 16:53:40.342+0000 INFO Starting... > 2016-09-01 16:53:40.613+0000 INFO Bolt enabled on localhost:7687. > 2016-09-01 16:53:43.864+0000 ERROR Failed to start Neo4j: Starting > Neo4j failed: Component > 'org.neo4j.server.database.LifecycleManagingDatabase@1377f3c' was > successfully initialized, but failed to start. Please see attached > cause exception. Starting Neo4j failed: Component > 'org.neo4j.server.database.LifecycleManagingDatabase@1377f3c' was > successfully initialized, but failed to start. Please see attached > cause exception. > org.neo4j.server.ServerStartupException: Starting Neo4j failed: > Component > 'org.neo4j.server.database.LifecycleManagingDatabase@1377f3c' was > successfully initialized, but failed to start. Please see attached > cause exception. > at > org.neo4j.server.exception.ServerStartupErrors.translateToServerStartupError(ServerStartupErrors.java:68) > at > org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:217) > at > org.neo4j.server.ServerBootstrapper.start(ServerBootstrapper.java:90) > at > org.neo4j.server.ServerBootstrapper.start(ServerBootstrapper.java:67) > at > org.neo4j.server.CommunityEntryPoint.main(CommunityEntryPoint.java:28) > Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component > 'org.neo4j.server.database.LifecycleManagingDatabase@1377f3c' was > successfully initialized, but failed to start. Please see attached > cause exception. > at > org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:444) > at > org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107) > at > org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:189) > ... 3 > more > > > > Caused by: java.lang.RuntimeException: Error starting > org.neo4j.kernel.impl.factory.CommunityFacadeFactory, > /var/lib/neo4j/data/databases/graph.db > > > at > org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.newFacade(GraphDatabaseFacadeFactory.java:144) > > > > at > org.neo4j.kernel.impl.factory.CommunityFacadeFactory.newFacade(CommunityFacadeFactory.java:40) > > > > at > org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.newFacade(GraphDatabaseFacadeFactory.java:108) > > > > at > org.neo4j.server.CommunityNeoServer.lambda$static$0(CommunityNeoServer.java:55) > > > > at > org.neo4j.server.database.LifecycleManagingDatabase.start(LifecycleManagingDatabase.java:89) > > > > at > org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:434) > ... 5 more > Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component > 'org.neo4j.kernel.recovery.Recovery@5ddaeea7' failed to initialize. > Please see attached cause exception. > at > org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.init(LifeSupport.java:416) > at > org.neo4j.kernel.lifecycle.LifeSupport.init(LifeSupport.java:62) > at > org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:98) > at > org.neo4j.kernel.NeoStoreDataSource.start(NeoStoreDataSource.java:511) > at > org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:434) > at > org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107) > at > org.neo4j.kernel.impl.transaction.state.DataSourceManager.start(DataSourceManager.java:99) > at > org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:434) > at > org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107) > at > org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.newFacade(GraphDatabaseFacadeFactory.java:140) > ... 10 more > Caused by: org.apache.lucene.store.AlreadyClosedException: this > IndexReader is closed > at > org.apache.lucene.index.IndexReader.ensureOpen(IndexReader.java:274) > at > org.apache.lucene.index.CompositeReader.getContext(CompositeReader.java:101) > at > org.apache.lucene.index.CompositeReader.getContext(CompositeReader.java:55) > at > org.apache.lucene.index.IndexReader.leaves(IndexReader.java:438) > at > org.apache.lucene.index.MultiFields.getFields(MultiFields.java:63) > at > org.apache.lucene.index.MultiFields.getTerms(MultiFields.java:120) > at > org.apache.lucene.search.IndexSearcher.collectionStatistics(IndexSearcher.java:964) > at > org.apache.lucene.search.TermQuery$TermWeight.<init>(TermQuery.java:65) > at > org.apache.lucene.search.TermQuery.createWeight(TermQuery.java:198) > at > org.apache.lucene.search.IndexSearcher.createWeight(IndexSearcher.java:904) > at > org.apache.lucene.search.IndexSearcher.createNormalizedWeight(IndexSearcher.java:887) > at > org.apache.lucene.search.IndexSearcher.search(IndexSearcher.java:535) > at > org.apache.lucene.search.IndexSearcher.search(IndexSearcher.java:744) > at > org.apache.lucene.search.IndexSearcher.searchAfter(IndexSearcher.java:460) > at > org.apache.lucene.search.IndexSearcher.search(IndexSearcher.java:489) > at > org.neo4j.index.impl.lucene.legacy.LuceneDataSource.findDocument(LuceneDataSource.java:436) > at > org.neo4j.index.impl.lucene.legacy.CommitContext.getDocument(CommitContext.java:71) > at > org.neo4j.index.impl.lucene.legacy.LuceneCommandApplier.visitIndexAddCommand(LuceneCommandApplier.java:88) > at > org.neo4j.index.impl.lucene.legacy.LuceneCommandApplier.visitIndexAddNodeCommand(LuceneCommandApplier.java:62) > at > org.neo4j.kernel.impl.api.LegacyIndexTransactionApplier.visitIndexAddNodeCommand(LegacyIndexTransactionApplier.java:166) > at > org.neo4j.kernel.impl.index.IndexCommand$AddNodeCommand.handle(IndexCommand.java:233) > at > org.neo4j.kernel.impl.api.TransactionApplierFacade.visit(TransactionApplierFacade.java:61) > at > org.neo4j.kernel.impl.api.TransactionApplierFacade.visit(TransactionApplierFacade.java:35) > at > org.neo4j.kernel.impl.transaction.log.PhysicalTransactionRepresentation.accept(PhysicalTransactionRepresentation.java:69) > at > org.neo4j.kernel.impl.api.TransactionToApply.accept(TransactionToApply.java:108) > at > org.neo4j.kernel.impl.storageengine.impl.recordstorage.RecordStorageEngine.apply(RecordStorageEngine.java:341) > at > org.neo4j.kernel.impl.transaction.state.RecoveryVisitor.applyQueue(RecoveryVisitor.java:87) > at > org.neo4j.kernel.impl.api.TransactionQueue.empty(TransactionQueue.java:67) > at > org.neo4j.kernel.impl.transaction.state.RecoveryVisitor.close(RecoveryVisitor.java:93) > at > org.neo4j.kernel.impl.transaction.log.LogFileRecoverer.visit(LogFileRecoverer.java:80) > at > org.neo4j.kernel.impl.transaction.log.LogFileRecoverer.visit(LogFileRecoverer.java:30) > at org.neo4j.kernel.recovery.Recovery.init(Recovery.java:86) > at > org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.init(LifeSupport.java:406) > > > > -- > > Alan Robertson / CTO > [email protected] <mailto:[email protected]>/ > +1 303.947.7999 > > Assimilation Systems Limited > http://AssimilationSystems.com > > Twitter <https://twitter.com/ossalanr> Linkedin > <https://www.linkedin.com/in/alanr> skype > <https://htmlsig.com/skype?username=alanr_unix.sh> > > -- > You received this message because you are subscribed to the Google > Groups "Neo4j" group. > To unsubscribe from this group and stop receiving emails from it, send > an email to [email protected] > <mailto:[email protected]>. > For more options, 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