Wrong. I didn't test what I thought I did - it's still broken - Sigh...

For some reason I didn't have the initial failure messages in the logs
below - but here are some additional messages.

[o.n.k.i.s.f.RecordFormatSelector] Selected
RecordFormat:StandardV3_0[v0.A.7] record format from store
/var/lib/neo4j/data/databases/graph.db
[o.n.k.i.s.f.RecordFormatSelector] Format not configured. Selected
format from the store: RecordFormat:StandardV3_0[v0.A.7]
[o.n.k.NeoStoreDataSource] Recovery required from position
LogPosition{logVersion=0, byteOffset=362783}
ERROR [o.n.k.i.DatabaseHealth] Database panic: Database has encountered
some problem, please perform necessary action (tx recovery/restart) this
IndexReader is closed


On 09/22/2016 03:39 PM, Alan Robertson wrote:
> It looks like this is some kind of bug related to Docker and apparmor.
> Disabling apparmor makes it go away...
>
>
> On 09/01/2016 11:11 AM, Alan Robertson wrote:
>> Hi,
>>
>> I've been having trouble with getting Neo4j to start in a docker
>> image. This image was produced by a Dockerfile which built my
>> software and installed and ran Neo4j and my tests without any issues.
>> But when I try and start the resulting image, Neo4j declines to start
>> for mysterious reasons. The logs from trying to start it are below:
>>
>> NEO4J_CONF=/etc/neo4j /usr/share/neo4j/bin/neo4j console
>> Starting Neo4j.
>> 2016-09-01 16:53:40.342+0000 INFO  Starting...
>> 2016-09-01 16:53:40.613+0000 INFO  Bolt enabled on localhost:7687.
>> 2016-09-01 16:53:43.864+0000 ERROR Failed to start Neo4j: Starting
>> Neo4j failed: Component
>> 'org.neo4j.server.database.LifecycleManagingDatabase@1377f3c' was
>> successfully initialized, but failed to start. Please see attached
>> cause exception. Starting Neo4j failed: Component
>> 'org.neo4j.server.database.LifecycleManagingDatabase@1377f3c' was
>> successfully initialized, but failed to start. Please see attached
>> cause exception.
>> org.neo4j.server.ServerStartupException: Starting Neo4j failed:
>> Component
>> 'org.neo4j.server.database.LifecycleManagingDatabase@1377f3c' was
>> successfully initialized, but failed to start. Please see attached
>> cause exception.
>>         at
>> org.neo4j.server.exception.ServerStartupErrors.translateToServerStartupError(ServerStartupErrors.java:68)
>>         at
>> org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:217)
>>         at
>> org.neo4j.server.ServerBootstrapper.start(ServerBootstrapper.java:90)
>>         at
>> org.neo4j.server.ServerBootstrapper.start(ServerBootstrapper.java:67)
>>         at
>> org.neo4j.server.CommunityEntryPoint.main(CommunityEntryPoint.java:28)
>> Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component
>> 'org.neo4j.server.database.LifecycleManagingDatabase@1377f3c' was
>> successfully initialized, but failed to start. Please see attached
>> cause exception.
>>         at
>> org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:444)
>>         at
>> org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
>>         at
>> org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:189)
>>         ... 3
>> more                                                                         
>>                                                                              
>>                                                       
>>
>> Caused by: java.lang.RuntimeException: Error starting
>> org.neo4j.kernel.impl.factory.CommunityFacadeFactory,
>> /var/lib/neo4j/data/databases/graph.db                                       
>>                                      
>>
>>         at
>> org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.newFacade(GraphDatabaseFacadeFactory.java:144)
>>                                                                              
>>                                
>>
>>         at
>> org.neo4j.kernel.impl.factory.CommunityFacadeFactory.newFacade(CommunityFacadeFactory.java:40)
>>                                                                              
>>                                         
>>
>>         at
>> org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.newFacade(GraphDatabaseFacadeFactory.java:108)
>>                                                                              
>>                                
>>
>>         at
>> org.neo4j.server.CommunityNeoServer.lambda$static$0(CommunityNeoServer.java:55)
>>                                                                              
>>                                                        
>>
>>         at
>> org.neo4j.server.database.LifecycleManagingDatabase.start(LifecycleManagingDatabase.java:89)
>>                                                                              
>>                                           
>>
>>         at
>> org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:434)
>>         ... 5 more
>> Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component
>> 'org.neo4j.kernel.recovery.Recovery@5ddaeea7' failed to initialize.
>> Please see attached cause exception.
>>         at
>> org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.init(LifeSupport.java:416)
>>         at
>> org.neo4j.kernel.lifecycle.LifeSupport.init(LifeSupport.java:62)
>>         at
>> org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:98)
>>         at
>> org.neo4j.kernel.NeoStoreDataSource.start(NeoStoreDataSource.java:511)
>>         at
>> org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:434)
>>         at
>> org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
>>         at
>> org.neo4j.kernel.impl.transaction.state.DataSourceManager.start(DataSourceManager.java:99)
>>         at
>> org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:434)
>>         at
>> org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:107)
>>         at
>> org.neo4j.kernel.impl.factory.GraphDatabaseFacadeFactory.newFacade(GraphDatabaseFacadeFactory.java:140)
>>         ... 10 more
>> Caused by: org.apache.lucene.store.AlreadyClosedException: this
>> IndexReader is closed
>>         at
>> org.apache.lucene.index.IndexReader.ensureOpen(IndexReader.java:274)
>>         at
>> org.apache.lucene.index.CompositeReader.getContext(CompositeReader.java:101)
>>         at
>> org.apache.lucene.index.CompositeReader.getContext(CompositeReader.java:55)
>>         at
>> org.apache.lucene.index.IndexReader.leaves(IndexReader.java:438)
>>         at
>> org.apache.lucene.index.MultiFields.getFields(MultiFields.java:63)
>>         at
>> org.apache.lucene.index.MultiFields.getTerms(MultiFields.java:120)
>>         at
>> org.apache.lucene.search.IndexSearcher.collectionStatistics(IndexSearcher.java:964)
>>         at
>> org.apache.lucene.search.TermQuery$TermWeight.<init>(TermQuery.java:65)
>>         at
>> org.apache.lucene.search.TermQuery.createWeight(TermQuery.java:198)
>>         at
>> org.apache.lucene.search.IndexSearcher.createWeight(IndexSearcher.java:904)
>>         at
>> org.apache.lucene.search.IndexSearcher.createNormalizedWeight(IndexSearcher.java:887)
>>         at
>> org.apache.lucene.search.IndexSearcher.search(IndexSearcher.java:535)
>>         at
>> org.apache.lucene.search.IndexSearcher.search(IndexSearcher.java:744)
>>         at
>> org.apache.lucene.search.IndexSearcher.searchAfter(IndexSearcher.java:460)
>>         at
>> org.apache.lucene.search.IndexSearcher.search(IndexSearcher.java:489)
>>         at
>> org.neo4j.index.impl.lucene.legacy.LuceneDataSource.findDocument(LuceneDataSource.java:436)
>>         at
>> org.neo4j.index.impl.lucene.legacy.CommitContext.getDocument(CommitContext.java:71)
>>         at
>> org.neo4j.index.impl.lucene.legacy.LuceneCommandApplier.visitIndexAddCommand(LuceneCommandApplier.java:88)
>>         at
>> org.neo4j.index.impl.lucene.legacy.LuceneCommandApplier.visitIndexAddNodeCommand(LuceneCommandApplier.java:62)
>>         at
>> org.neo4j.kernel.impl.api.LegacyIndexTransactionApplier.visitIndexAddNodeCommand(LegacyIndexTransactionApplier.java:166)
>>         at
>> org.neo4j.kernel.impl.index.IndexCommand$AddNodeCommand.handle(IndexCommand.java:233)
>>         at
>> org.neo4j.kernel.impl.api.TransactionApplierFacade.visit(TransactionApplierFacade.java:61)
>>         at
>> org.neo4j.kernel.impl.api.TransactionApplierFacade.visit(TransactionApplierFacade.java:35)
>>         at
>> org.neo4j.kernel.impl.transaction.log.PhysicalTransactionRepresentation.accept(PhysicalTransactionRepresentation.java:69)
>>         at
>> org.neo4j.kernel.impl.api.TransactionToApply.accept(TransactionToApply.java:108)
>>         at
>> org.neo4j.kernel.impl.storageengine.impl.recordstorage.RecordStorageEngine.apply(RecordStorageEngine.java:341)
>>         at
>> org.neo4j.kernel.impl.transaction.state.RecoveryVisitor.applyQueue(RecoveryVisitor.java:87)
>>         at
>> org.neo4j.kernel.impl.api.TransactionQueue.empty(TransactionQueue.java:67)
>>         at
>> org.neo4j.kernel.impl.transaction.state.RecoveryVisitor.close(RecoveryVisitor.java:93)
>>         at
>> org.neo4j.kernel.impl.transaction.log.LogFileRecoverer.visit(LogFileRecoverer.java:80)
>>         at
>> org.neo4j.kernel.impl.transaction.log.LogFileRecoverer.visit(LogFileRecoverer.java:30)
>>         at org.neo4j.kernel.recovery.Recovery.init(Recovery.java:86)
>>         at
>> org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.init(LifeSupport.java:406)
>>
>>
>>
>> -- 
>>
>> Alan Robertson / CTO
>> al...@assimilationsystems.com <mailto:al...@assimilationsystems.com>/
>> +1 303.947.7999
>>
>> Assimilation Systems Limited
>> http://AssimilationSystems.com
>>
>> Twitter <https://twitter.com/ossalanr> Linkedin
>> <https://www.linkedin.com/in/alanr> skype
>> <https://htmlsig.com/skype?username=alanr_unix.sh>
>>
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