I managed to get this working with 5.3.1 eventually with the following 
configuratoin:

    --enable-ucd-snmp-compatibility \
    --with-mib-modules="host ucd-snmp/dlmod ucd-snmp/diskio 
ip-mib/ipv4InterfaceTable agentx/subagent agentx/master agentx 
ucd-snmp/loadave ucd-snmp/memory ucd-snmp/file ucd-snmp/logmatch 
ucd-snmp/extensible agent/extend ucd-snmp/pass ucd-snmp/pass_persist 
ucd-snmp/proc ucd-snmp/disk" \
    --disable-manuals \
    --disable-debugging \
    --with-default-snmp-version=3 \
    --with-sys-contact="[EMAIL PROTECTED]" \
    --with-sys-location="Unknown" \
    --enable-shared \
    --with-logfile=/var/log/snmpd.log \
    --with-persistent-directory="/var/lib/net-snmp" \
    --disable-ipv6 --disable-internal-md5 --with-openssl 
--without-libwrap --without-rpm --without-bzip2 --without-zlib 
--without-elf \
    --sysconfdir=/etc



However, it doesnt' work with 5.4.1:

    --enable-ucd-snmp-compatibility \
    --with-mib-modules="host ucd-snmp/dlmod ucd-snmp/diskio 
ip-mib/ipv4InterfaceTable agentx/subagent agentx/master agentx 
ucd-snmp/loadave ucd-snmp/memory ucd-snmp/file ucd-snmp/logmatch 
ucd-snmp/extensible agent/extend ucd-snmp/pass ucd-snmp/pass_persist 
ucd-snmp/proc ucd-snmp/disk" \
    --disable-manuals \
    --disable-debugging \
    --disable-embedded-perl \
    --with-default-snmp-version=3 \
    --with-sys-contact="[EMAIL PROTECTED]" \
    --with-sys-location="Unknown" \
    --enable-shared \
    --with-logfile=/var/log/snmpd.log \
    --with-persistent-directory="/var/lib/net-snmp" \
    --disable-ipv6 --disable-internal-md5 --with-openssl 
--without-libwrap --without-rpm --without-bzip2 --without-zlib 
--without-elf \
    --sysconfdir=/etc





The only difference here being that '--disable-embedded-perl' has been 
added, as no perl is available on the system.



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