Hi Peter, I am glad you solved this and special thanks for posting the details!
Michael On Wed, Apr 24, 2013 at 3:28 PM, Kirsch, Peter <[email protected]>wrote: > Hi again,**** > > ** ** > > I now found the reason for my problem. (it always takes a long time until > I find time to revisit such problems). I just post my finding for the case > that anyone else experiences the same problem and searches for a solution. > The crude behavior (wrong number of dicom files found) is only observable > when the dicom files are stored on a samba share. When converting locals > files, everything works on Ubuntu as fine as on other distributions. It’s > independent of the dcm2nii version (true for NeuroDebian and Centos > Version) . Seems that it’s neither a direct dcm2nii problem nor a > NeurDebian version problem but an interaction between dcm2nii and Ubuntu. > Both, dinifti and mriconvert find the correct number of files (and dinifti > works with IMA).**** > > ** ** > > Best, Peter**** > > ** ** > > ** ** > > *Von:* Michael Hanke [mailto:[email protected]] > *Gesendet:* Donnerstag, 28. März 2013 11:56 > *An:* Kirsch, Peter > *Cc:* [email protected] > *Betreff:* Re: [Neurodebian-users] Problem with dcm2nii**** > > ** ** > > Hi,**** > > ** ** > > On Thu, Mar 28, 2013 at 11:39 AM, Kirsch, Peter < > [email protected]> wrote:**** > > Sorry for not answering, I did not receive your replies (Anyway, thanks > for the fast response). I now subscribed to the list…**** > > It might indeed be the case that I replaced the May 5 version with the > December 12 version from my CentOS machine (I thought I did it the other > way around) but in any case: the behavior did not differ at all.**** > > ** ** > > Does that mean you are seeing the problematic behavior with the > NeuroDebian version from May _and_**** > > with a Centos version from December on the same Ubuntu machine, but it > works on Centos?**** > > ** ** > > This would be surprising, as dcm2nii is self-contained and doesn't use any > system libs:**** > > ** ** > > % ldd /usr/bin/dcm2nii**** > > not a dynamic executable**** > > ** ** > > If you can confirm this, we might need to look for reasons beyond the > scope of dcm2nii.**** > > ** ** > > As a sidenote: what happens if you run 'dinifti' from the 'dicomnifiti' > package on the files?**** > > Not sure if it handles IMA files, but it should work fine for DICOMs**** > > ** ** > > ** ** > > Michael**** > > ** ** > > -- **** > > Michael Hanke**** > > http://mih.voxindeserto.de**** > > ** ** > -- Michael Hanke http://mih.voxindeserto.de
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