I am yet to check on Ubuntu 12.04, seems to work fine on my Debian jessie/sid (see below). Could you list also which atlases you have?
$> dpkg -l fsl*atlas\* ? and the next thing would be to see if anything useful would come out of running gdb --args atlasquery --dumpatlases then "r<enter>" and whenever crashes "bt<enter>" $> atlasquery --dumpatlases Cerebellar Atlas in MNI152 space after normalization with FLIRT Cerebellar Atlas in MNI152 space after normalization with FNIRT Harvard-Oxford Cortical Structural Atlas Harvard-Oxford Cortical Structural Atlas (Lateralized) Harvard-Oxford Subcortical Structural Atlas JHU ICBM-DTI-81 White-Matter Labels JHU White-Matter Tractography Atlas Juelich Histological Atlas MNI Structural Atlas NeuroSynth (http://neurosynth.org) 100 top terms (posterior_z) NeuroSynth (http://neurosynth.org) 100 top terms (prior_z) NeuroSynth (http://neurosynth.org) all 525 terms (posterior_z) NeuroSynth (http://neurosynth.org) all 525 terms (prior_z) Oxford Thalamic Connectivity Probability Atlas Oxford-Imanova Striatal Connectivity Atlas 3 sub-regions Oxford-Imanova Striatal Connectivity Atlas 7 sub-regions Oxford-Imanova Striatal Structural Atlas Subthalamic Nucleus Atlas Talairach Daemon Labels $> apt-cache policy fsl-5.0-core fsl-5.0-core: Installed: 5.0.6-1~nd80+1 Candidate: 5.0.6-1~nd80+1 Version table: *** 5.0.6-1~nd80+1 0 400 http://neuro.debian.net/debian/ jessie/non-free amd64 Packages 100 /var/lib/dpkg/status On Thu, 09 Jan 2014, Jonathan Brooks wrote: > Sorry - I don't think our system allows core files to be written…. there's > nothing obvious being created. Unless I'm looking in the wrong place. > The weird thing is that presumably this same tool gets used to provide atlas > information within fslview - which is working fine. > Cheers, Jon > On 9 Jan 2014, at 11:10, "Yury V. Zaytsev" <[email protected]> wrote: > > On Thu, 2014-01-09 at 11:02 +0000, Jonathan Brooks wrote: > >> I'm not a programmer, so you may have to give me some help with > >> debugging. I wouldn't know where to begin with the output from gdb. > > I think that the first step would be to post it to the list, so that > > others can see it :-) Then, someone familiar with source code can have a > > look at it and suggest additional tests to narrow down the problem. > > -- > > Sincerely yours, > > Yury V. Zaytsev -- Yaroslav O. Halchenko, Ph.D. http://neuro.debian.net http://www.pymvpa.org http://www.fail2ban.org Senior Research Associate, Psychological and Brain Sciences Dept. Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755 Phone: +1 (603) 646-9834 Fax: +1 (603) 646-1419 WWW: http://www.linkedin.com/in/yarik _______________________________________________ Neurodebian-users mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/neurodebian-users
