Web Clip [Print all] [In new window] Dear all, I have been trying to narrow down the problem further. When I type condor_q -long <jobID> for one of the failed jobs, I get the information that Owner = brain and User= brain@neurodebian. When I then go to the filer that produced the 'permission denied' message, and type ls-l it says: drwxrwx--- 1 root vboxsf 2042 Jan 21 12:53 FOLDERNAME. Could this somehow explain the permission denied error? Best wishes Jacquie
Dear all, I have been trying to use neurodebian with condor on a mac machine to parallelise higher level FSL. Following the instructions form the neurodebian website, I managed without any problems to install virtual machine, neurodebian, fsl and condor. I then also followed the instructions in 'enjoy parallelized fsl' section, namely I typed in the neuordebian terminal: . /etc/fsl/fsl.sh export FSLPARALLEL=condor then I opened feat and started a higher level analysis on first level analyses I had already run on the mac before. This seemed to work fine initially: typing condor_q showed me that many jobs had been created and where on 'running' or 'held'. Also, in the activity monitor, I saw a very high CPU and memory usage, which suggested to me it's running. But I think now there has been some problem somewhere: since 10pm last night, no new outputs have been created (I started it at 4pm) and now it is 3pm the next day. And when I type condor_q -hold, I see that there are queues on hold because of 'Cannot access initial working directory /media/sf_host/gfeats/design37_Debian/cope33.feat: Permission denied' where 'design37_Debian' is where the FSL output of the higher level analysis is stored. And so '.../design37_Debian/cope33.feat' is a folder that has been created while running the analysis from within debian. When I go within neurodebian to the folders and click on 'properties>permission', it says 'Read & Write' for Owner:root and for Group:vboxsf. In the terminal, when I type ls -l, it tells me 'drwxrwx---'. The timing of this process on hold is about 5 min after I started the initial analysis. For other processes it says 'submitted on hold at user's request' and the timing of this is the time when I started the initial analysis. When I type condor_status, it tells me that all 5 processors are in state 'unclaimed' and activity 'idle'. I would be very grateful for any advice I could get on this Best wishes Jacquie [https://ssl.gstatic.com/ui/v1/icons/mail/no_photo.png] Click here to Reply or Forward 7.15 GB (47%) of 15 GB used Manage<https://accounts.google.com/b/0/ManageStorage?hl=en> ©2015 Google - Terms<https://www.google.com/intl/en/policies/terms/> - Privacy<https://www.google.com/intl/en/policies/privacy/> Last account activity: 44 minutes ago Details
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