Thank you Morgan -- you are completely right about this collision with graphviz
unfortunately it would require a fix up of the fsl.sh we ship, where we append and not prepend FSL_DIR/bin to the PATH. As a quick remedy you can do source /etc/fsl/fsl.sh; export PATH=$FSLDIR/bin:$PATH P.S. watch out for https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=804881 to be closed ;) On Thu, 10 Dec 2015, Morgan Hough wrote: > Hi Jian Hou, > It looks like you have cluster from graphviz higher up in your PATH. Check > "which cluster" to see which binary you are calling and "echo $PATH" to see > how > your path is configured. Hope that helps. > Cheers, > -Morgan > On Thu, Dec 10, 2015 at 5:08 PM, jian hou <[1][email protected]> wrote: > Hi all, > I performed a nonparametric 1-sample t-test (randomise -i my4Dfile -o > OneSampT -1 -T) and then reported cluster results using the following > command: > cluster -i OneSampT_corrp_tstat1 -t 0.95 -mm > However, I got an error which read: > ~~~~~~ > option -i unrecognized - ignored > Usage: cluster <options> graphfile > -C k - generate no more than k clusters (0) > 0 : no limit > -c k - use clustering method k (0) > 0 : use modularity > 1 : use modularity quality > -o <outfile> - output file (stdout) > -v - verbose mode > -? - print usage > ~~~~~~ > Could you please guide me how can I fix my problem? > Thanks in advance. > Cheers, > Jian Hou > > _______________________________________________ > Neurodebian-users mailing list > [2][email protected] > [3]http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/ > neurodebian-users > References: > [1] mailto:[email protected] > [2] mailto:[email protected] > [3] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/neurodebian-users > _______________________________________________ > Neurodebian-users mailing list > [email protected] > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/neurodebian-users -- Yaroslav O. Halchenko Center for Open Neuroscience http://centerforopenneuroscience.org Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755 Phone: +1 (603) 646-9834 Fax: +1 (603) 646-1419 WWW: http://www.linkedin.com/in/yarik _______________________________________________ Neurodebian-users mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/neurodebian-users
