Thank you Morgan and Yaroslav! The solutions you provide both works well and I really appreciate it! Best regards, Jian Hou
At 2015-12-11 22:27:57, "Yaroslav Halchenko" <[email protected]> wrote: >Thank you Morgan -- you are completely right about this collision with >graphviz > >unfortunately it would require a fix up of the fsl.sh we ship, where we >append and not prepend FSL_DIR/bin to the PATH. As a quick remedy you can do > >source /etc/fsl/fsl.sh; export PATH=$FSLDIR/bin:$PATH > >P.S. watch out for https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=804881 to >be closed ;) > >On Thu, 10 Dec 2015, Morgan Hough wrote: > >> Hi Jian Hou, > >> It looks like you have cluster from graphviz higher up in your PATH. Check >> "which cluster" to see which binary you are calling and "echo $PATH" to see >> how >> your path is configured. Hope that helps. > >> Cheers, > >> -Morgan > >> On Thu, Dec 10, 2015 at 5:08 PM, jian hou <[1][email protected]> wrote: > >> Hi all, >> I performed a nonparametric 1-sample t-test (randomise -i my4Dfile -o >> OneSampT -1 -T) and then reported cluster results using the following >> command: >> cluster -i OneSampT_corrp_tstat1 -t 0.95 -mm >> However, I got an error which read: >> ~~~~~~ >> option -i unrecognized - ignored >> Usage: cluster <options> graphfile >> -C k - generate no more than k clusters (0) >> 0 : no limit >> -c k - use clustering method k (0) >> 0 : use modularity >> 1 : use modularity quality >> -o <outfile> - output file (stdout) >> -v - verbose mode >> -? - print usage >> ~~~~~~ >> Could you please guide me how can I fix my problem? >> Thanks in advance. >> Cheers, >> Jian Hou > > > >> > > >> _______________________________________________ >> Neurodebian-users mailing list >> [2][email protected] >> [3]http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/ >> neurodebian-users > > > >> References: > >> [1] mailto:[email protected] >> [2] mailto:[email protected] >> [3] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/neurodebian-users > >> _______________________________________________ >> Neurodebian-users mailing list >> [email protected] >> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/neurodebian-users > > >-- >Yaroslav O. Halchenko >Center for Open Neuroscience http://centerforopenneuroscience.org >Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755 >Phone: +1 (603) 646-9834 Fax: +1 (603) 646-1419 >WWW: http://www.linkedin.com/in/yarik > >_______________________________________________ >Neurodebian-users mailing list >[email protected] >http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/neurodebian-users
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