abdullah alamoudi has submitted this change and it was merged. Change subject: Fix upsert deadlock and upsert with filtered primary only ......................................................................
Fix upsert deadlock and upsert with filtered primary only This change fixes a deadlock that happens when 3 operations an upsert, a search and a flush happen simulteniously. If all the memory components are full, the upsert gets blocked, the upsert could've obtained a lock on the search key which would block the search not allowing it to exit the components and not allowing the components to be cleared and reused. In addition, the change refactors common LSM index code. Change-Id: I93fac0f27ab0b3cc071ff38aef90d850cbbce488 Reviewed-on: https://asterix-gerrit.ics.uci.edu/1762 Tested-by: Jenkins <[email protected]> BAD: Jenkins <[email protected]> Integration-Tests: Jenkins <[email protected]> Reviewed-by: Murtadha Hubail <[email protected]> --- M asterixdb/asterix-common/src/main/java/org/apache/asterix/common/dataflow/NoOpFrameOperationCallbackFactory.java M asterixdb/asterix-common/src/main/java/org/apache/asterix/common/ioopcallbacks/AbstractLSMIOOperationCallback.java M asterixdb/asterix-common/src/main/java/org/apache/asterix/common/ioopcallbacks/LSMBTreeIOOperationCallback.java M asterixdb/asterix-common/src/main/java/org/apache/asterix/common/ioopcallbacks/LSMBTreeWithBuddyIOOperationCallback.java M asterixdb/asterix-common/src/main/java/org/apache/asterix/common/ioopcallbacks/LSMInvertedIndexIOOperationCallback.java M asterixdb/asterix-common/src/main/java/org/apache/asterix/common/ioopcallbacks/LSMRTreeIOOperationCallback.java M asterixdb/asterix-external-data/src/main/java/org/apache/asterix/external/operators/ExternalFilesIndexModificationOperatorDescriptor.java M asterixdb/asterix-external-data/src/main/java/org/apache/asterix/external/operators/ExternalIndexBulkModifyOperatorDescriptor.java M asterixdb/asterix-external-data/src/main/java/org/apache/asterix/external/operators/ExternalIndexBulkModifyOperatorNodePushable.java M asterixdb/asterix-metadata/src/main/java/org/apache/asterix/metadata/utils/SecondaryIndexOperationsHelper.java M asterixdb/asterix-runtime/src/main/java/org/apache/asterix/runtime/operators/LSMPrimaryUpsertOperatorNodePushable.java M hyracks-fullstack/hyracks/hyracks-api/src/main/java/org/apache/hyracks/api/exceptions/ErrorCode.java M hyracks-fullstack/hyracks/hyracks-api/src/main/resources/errormsg/en.properties M hyracks-fullstack/hyracks/hyracks-storage-am-btree/src/main/java/org/apache/hyracks/storage/am/btree/impls/BTree.java M hyracks-fullstack/hyracks/hyracks-storage-am-btree/src/main/java/org/apache/hyracks/storage/am/btree/impls/BTreeCountingSearchCursor.java M hyracks-fullstack/hyracks/hyracks-storage-am-btree/src/main/java/org/apache/hyracks/storage/am/btree/impls/BTreeRangeSearchCursor.java M hyracks-fullstack/hyracks/hyracks-storage-am-common/src/main/java/org/apache/hyracks/storage/am/common/api/ITreeIndexCursor.java M hyracks-fullstack/hyracks/hyracks-storage-am-common/src/main/java/org/apache/hyracks/storage/am/common/impls/AbstractTreeIndex.java M hyracks-fullstack/hyracks/hyracks-storage-am-common/src/main/java/org/apache/hyracks/storage/am/common/impls/TreeIndexDiskOrderScanCursor.java M hyracks-fullstack/hyracks/hyracks-storage-am-common/src/main/java/org/apache/hyracks/storage/am/common/tuples/DualTupleReference.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-btree/src/main/java/org/apache/hyracks/storage/am/lsm/btree/impls/ExternalBTree.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-btree/src/main/java/org/apache/hyracks/storage/am/lsm/btree/impls/ExternalBTreeOpContext.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-btree/src/main/java/org/apache/hyracks/storage/am/lsm/btree/impls/ExternalBTreeWithBuddy.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-btree/src/main/java/org/apache/hyracks/storage/am/lsm/btree/impls/ExternalBTreeWithBuddyOpContext.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-btree/src/main/java/org/apache/hyracks/storage/am/lsm/btree/impls/LSMBTree.java A hyracks-fullstack/hyracks/hyracks-storage-am-lsm-btree/src/main/java/org/apache/hyracks/storage/am/lsm/btree/impls/LSMBTreeBulkLoader.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-btree/src/main/java/org/apache/hyracks/storage/am/lsm/btree/impls/LSMBTreeFlushOperation.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-btree/src/main/java/org/apache/hyracks/storage/am/lsm/btree/impls/LSMBTreeMergeOperation.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-btree/src/main/java/org/apache/hyracks/storage/am/lsm/btree/impls/LSMBTreeOpContext.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-btree/src/main/java/org/apache/hyracks/storage/am/lsm/btree/impls/LSMBTreePointSearchCursor.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-btree/src/main/java/org/apache/hyracks/storage/am/lsm/btree/impls/LSMBTreeSearchCursor.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-btree/src/main/java/org/apache/hyracks/storage/am/lsm/btree/impls/LSMBTreeWithBuddyAbstractCursor.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-btree/src/main/java/org/apache/hyracks/storage/am/lsm/btree/impls/LSMBTreeWithBuddyMergeOperation.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/api/IFrameOperationCallback.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/api/ILSMComponentFilterFactory.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/api/ILSMHarness.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/api/ILSMIOOperation.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/api/ILSMIndex.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/api/ILSMIndexAccessor.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/api/ILSMIndexOperationContext.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/api/ITwoPCIndex.java A hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/impls/AbstractIoOperation.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/impls/AbstractLSMIndex.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/impls/AbstractLSMIndexOperationContext.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/impls/AsynchronousScheduler.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/impls/DiskComponentMetadata.java A hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/impls/FlushOperation.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/impls/LSMComponentFilterFactory.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/impls/LSMHarness.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/impls/LSMIndexReplicationJob.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/impls/LSMIndexSearchCursor.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/impls/LSMTreeIndexAccessor.java A hyracks-fullstack/hyracks/hyracks-storage-am-lsm-common/src/main/java/org/apache/hyracks/storage/am/lsm/common/impls/MergeOperation.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-invertedindex/src/main/java/org/apache/hyracks/storage/am/lsm/invertedindex/impls/LSMInvertedIndex.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-invertedindex/src/main/java/org/apache/hyracks/storage/am/lsm/invertedindex/impls/LSMInvertedIndexAccessor.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-invertedindex/src/main/java/org/apache/hyracks/storage/am/lsm/invertedindex/impls/LSMInvertedIndexFlushOperation.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-invertedindex/src/main/java/org/apache/hyracks/storage/am/lsm/invertedindex/impls/LSMInvertedIndexMergeOperation.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-invertedindex/src/main/java/org/apache/hyracks/storage/am/lsm/invertedindex/impls/LSMInvertedIndexOpContext.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-rtree/src/main/java/org/apache/hyracks/storage/am/lsm/rtree/impls/AbstractLSMRTree.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-rtree/src/main/java/org/apache/hyracks/storage/am/lsm/rtree/impls/ExternalRTree.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-rtree/src/main/java/org/apache/hyracks/storage/am/lsm/rtree/impls/ExternalRTreeOpContext.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-rtree/src/main/java/org/apache/hyracks/storage/am/lsm/rtree/impls/LSMRTree.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-rtree/src/main/java/org/apache/hyracks/storage/am/lsm/rtree/impls/LSMRTreeAbstractCursor.java A hyracks-fullstack/hyracks/hyracks-storage-am-lsm-rtree/src/main/java/org/apache/hyracks/storage/am/lsm/rtree/impls/LSMRTreeAccessor.java A hyracks-fullstack/hyracks/hyracks-storage-am-lsm-rtree/src/main/java/org/apache/hyracks/storage/am/lsm/rtree/impls/LSMRTreeBulkLoader.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-rtree/src/main/java/org/apache/hyracks/storage/am/lsm/rtree/impls/LSMRTreeFlushOperation.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-rtree/src/main/java/org/apache/hyracks/storage/am/lsm/rtree/impls/LSMRTreeMergeOperation.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-rtree/src/main/java/org/apache/hyracks/storage/am/lsm/rtree/impls/LSMRTreeOpContext.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-rtree/src/main/java/org/apache/hyracks/storage/am/lsm/rtree/impls/LSMRTreeWithAntiMatterTuples.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-rtree/src/main/java/org/apache/hyracks/storage/am/lsm/rtree/impls/LSMRTreeWithAntiMatterTuplesFlushCursor.java M hyracks-fullstack/hyracks/hyracks-storage-am-lsm-rtree/src/main/java/org/apache/hyracks/storage/am/lsm/rtree/impls/TreeTupleSorter.java M hyracks-fullstack/hyracks/hyracks-storage-am-rtree/src/main/java/org/apache/hyracks/storage/am/rtree/impls/RTreeSearchCursor.java M hyracks-fullstack/hyracks/hyracks-storage-common/src/main/java/org/apache/hyracks/storage/common/IIndex.java M hyracks-fullstack/hyracks/hyracks-tests/hyracks-storage-am-lsm-btree-test/src/test/java/org/apache/hyracks/storage/am/lsm/btree/multithread/LSMBTreeTestWorker.java D hyracks-fullstack/hyracks/hyracks-tests/hyracks-storage-am-lsm-common-test/src/test/java/org/apache/hyracks/storage/am/lsm/common/DummyTreeFactory.java R hyracks-fullstack/hyracks/hyracks-tests/hyracks-storage-am-lsm-common-test/src/test/java/org/apache/hyracks/storage/am/lsm/common/component/TestLsmIndexFileManager.java R hyracks-fullstack/hyracks/hyracks-tests/hyracks-storage-am-lsm-common-test/src/test/java/org/apache/hyracks/storage/am/lsm/common/test/LSMComponentFilterReferenceTest.java R hyracks-fullstack/hyracks/hyracks-tests/hyracks-storage-am-lsm-common-test/src/test/java/org/apache/hyracks/storage/am/lsm/common/test/LSMIndexFileManagerTest.java R hyracks-fullstack/hyracks/hyracks-tests/hyracks-storage-am-lsm-common-test/src/test/java/org/apache/hyracks/storage/am/lsm/common/test/VirtualBufferCacheTest.java R hyracks-fullstack/hyracks/hyracks-tests/hyracks-storage-am-lsm-common-test/src/test/java/org/apache/hyracks/storage/am/lsm/common/test/VirtualFreePageManagerTest.java M hyracks-fullstack/hyracks/hyracks-tests/hyracks-storage-am-lsm-rtree-test/src/test/java/org/apache/hyracks/storage/am/lsm/rtree/multithread/LSMRTreeTestWorker.java M hyracks-fullstack/hyracks/hyracks-tests/hyracks-storage-am-lsm-rtree-test/src/test/java/org/apache/hyracks/storage/am/lsm/rtree/multithread/LSMRTreeWithAntiMatterTuplesTestWorker.java 82 files changed, 2,069 insertions(+), 2,992 deletions(-) Approvals: Murtadha Hubail: Looks good to me, approved Jenkins: Verified; No violations found; Verified Objections: Jenkins: Violations found -- To view, visit https://asterix-gerrit.ics.uci.edu/1762 To unsubscribe, visit https://asterix-gerrit.ics.uci.edu/settings Gerrit-MessageType: merged Gerrit-Change-Id: I93fac0f27ab0b3cc071ff38aef90d850cbbce488 Gerrit-PatchSet: 6 Gerrit-Project: asterixdb Gerrit-Branch: master Gerrit-Owner: abdullah alamoudi <[email protected]> Gerrit-Reviewer: Jenkins <[email protected]> Gerrit-Reviewer: Murtadha Hubail <[email protected]> Gerrit-Reviewer: abdullah alamoudi <[email protected]>
