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Jeff Headley commented on CTAKES-370: ------------------------------------- In case it might help save someone else days of frustration, the advice mentioned in CTAKES-363 seems to have solved my problem. I extracted the files out of ctakes-smoking-status-res-3.2.2.jar and placed them in ctakes/desc and then edited the import lines as mentioned above and the errors went away. > Include smoking status in clinical pipeline > ------------------------------------------- > > Key: CTAKES-370 > URL: https://issues.apache.org/jira/browse/CTAKES-370 > Project: cTAKES > Issue Type: Improvement > Components: ctakes-clinical-pipeline, ctakes-smoking-status > Affects Versions: 3.2.2 > Environment: Linux > Reporter: Tomasz Oliwa > Priority: Minor > Attachments: AggregatePlaintextFastUMLSProcessor.xml > > > The smoking status detection can be included in the clinical pipeline. > Attached is a AggregatePlaintextFastUMLSProcessor.xml that has the clinical > pipeline + the smoking status detection integrated. > Currently cTAKES has smoking status resources that need to have > their imports adjusted for any smoking status detection to work. As a > workaround, in: > ProductionPostSentenceAggregate_step1.xml > change: > <import name="org.apache.ctakes.core.analysis_engine.TokenizerAnnotator"/> > <import > name="org.apache.ctakes.core.analysis_engine.SentenceDetectorAnnotator"/> > to the absolute or relative path (depends on the installed system, on my > machine it is) of these annotators: > <import > location="../../../../../../desc/ctakes-core/desc/analysis_engine/TokenizerAnnotator.xml"/> > <import > location="../../../../../../desc/ctakes-core/desc/analysis_engine/SentenceDetectorAnnotator.xml"/> -- This message was sent by Atlassian JIRA (v6.4.14#64029)