[
https://issues.apache.org/jira/browse/CTAKES-370?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16383808#comment-16383808
]
Tomasz Oliwa commented on CTAKES-370:
-------------------------------------
In cTAKES 4.0 this seems to be still necessary. I had to also manually extract
ctakes-relation-extractor-res-4.0.0.jar into the resources folder, and then
adjust the extracted ProductionPostSentenceAggregate_step1.xml deep inside the
resources folder as I initially mentioned above. Now is looks like it is
working again.
> Include smoking status in clinical pipeline
> -------------------------------------------
>
> Key: CTAKES-370
> URL: https://issues.apache.org/jira/browse/CTAKES-370
> Project: cTAKES
> Issue Type: Improvement
> Components: ctakes-clinical-pipeline, ctakes-smoking-status
> Affects Versions: 3.2.2
> Environment: Linux
> Reporter: Tomasz Oliwa
> Priority: Minor
> Attachments: AggregatePlaintextFastUMLSProcessor.xml
>
>
> The smoking status detection can be included in the clinical pipeline.
> Attached is a AggregatePlaintextFastUMLSProcessor.xml that has the clinical
> pipeline + the smoking status detection integrated.
> Currently cTAKES has smoking status resources that need to have
> their imports adjusted for any smoking status detection to work. As a
> workaround, in:
> ProductionPostSentenceAggregate_step1.xml
> change:
> <import name="org.apache.ctakes.core.analysis_engine.TokenizerAnnotator"/>
> <import
> name="org.apache.ctakes.core.analysis_engine.SentenceDetectorAnnotator"/>
> to the absolute or relative path (depends on the installed system, on my
> machine it is) of these annotators:
> <import
> location="../../../../../../desc/ctakes-core/desc/analysis_engine/TokenizerAnnotator.xml"/>
> <import
> location="../../../../../../desc/ctakes-core/desc/analysis_engine/SentenceDetectorAnnotator.xml"/>
--
This message was sent by Atlassian JIRA
(v7.6.3#76005)
