See <https://builds.apache.org/job/ctakes-trunk-Java-1.9/24/display/redirect?page=changes>
Changes: [seanfinan] Rewrite of Patient view cache ------------------------------------------ [...truncated 498.72 KB...] [INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-ytex-res --- [INFO] [INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-ytex-res --- [INFO] [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-ytex-res --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 48 resources [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-ytex-res --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-ytex-res --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-ytex-res --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-ytex-res --- [INFO] Surefire report directory: <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-ytex-res/target/surefire-reports> ------------------------------------------------------- T E S T S ------------------------------------------------------- Results : Tests run: 0, Failures: 0, Errors: 0, Skipped: 0 [JENKINS] Recording test results [INFO] [INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-ytex-res --- [INFO] Building jar: <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-ytex-res/target/ctakes-ytex-res-4.0.1-SNAPSHOT.jar> [INFO] [INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-ytex-res --- [INFO] [INFO] --- maven-install-plugin:2.3.1:install (default-install) @ ctakes-ytex-res --- [INFO] Installing <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-ytex-res/target/ctakes-ytex-res-4.0.1-SNAPSHOT.jar> to /home/jenkins/jenkins-slave/maven-repositories/1/org/apache/ctakes/ctakes-ytex-res/4.0.1-SNAPSHOT/ctakes-ytex-res-4.0.1-SNAPSHOT.jar [INFO] Installing <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-ytex-res/pom.xml> to /home/jenkins/jenkins-slave/maven-repositories/1/org/apache/ctakes/ctakes-ytex-res/4.0.1-SNAPSHOT/ctakes-ytex-res-4.0.1-SNAPSHOT.pom [JENKINS] Archiving disabled [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Skipping Apache cTAKES YTEX [INFO] This project has been banned from the build due to previous failures. 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SUCCESS [ 7.259 s] [INFO] ctakes-gui-res ..................................... SUCCESS [ 13.511 s] [INFO] Apache cTAKES Resources core ....................... SUCCESS [ 6.118 s] [INFO] Apache cTAKES common type system ................... SUCCESS [ 36.900 s] [INFO] Apache cTAKES utils ................................ SUCCESS [ 8.927 s] [INFO] Apache cTAKES core ................................. FAILURE [ 6.634 s] [INFO] ctakes-gui ......................................... SKIPPED [INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 4.852 s] [INFO] Apache cTAKES part-of-speech tagger ................ SKIPPED [INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 4.731 s] [INFO] Apache cTAKES chunker .............................. SKIPPED [INFO] Apache cTAKES document preprocessor ................ SKIPPED [INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 32.796 s] [INFO] Apache cTAKES dictionary lookup .................... SKIPPED [INFO] Apache cTAKES context dependent tokenizer .......... SKIPPED [INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 28.148 s] [INFO] Apache cTAKES LVG lexical tools .................... SKIPPED [INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 3.831 s] [INFO] Apache cTAKES named entity contexts ................ SKIPPED [INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 6.249 s] [INFO] Apache cTAKES Constituency Parser .................. SKIPPED [INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 10.499 s] [INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 6.088 s] [INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 4.335 s] [INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 5.850 s] [INFO] Apache cTAKES dictionary lookup fast ............... SKIPPED [INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 9.628 s] [INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 21.848 s] [INFO] Apache cTAKES Dependency Parser .................... SKIPPED [INFO] Apache cTAKES Assertion ............................ SKIPPED [INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 3.669 s] [INFO] Apache cTAKES ctakes-clinical-pipeline ............. SKIPPED [INFO] Apache cTAKES Relation Extractor ................... SKIPPED [INFO] Apache cTAKES Temporal Information Extraction ...... SKIPPED [INFO] Apache cTAKES CoReference Resolver ................. SKIPPED [INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 4.120 s] [INFO] Apache cTAKES Drug NER ............................. SKIPPED [INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 4.352 s] [INFO] Apache cTAKES Side Effects ......................... SKIPPED [INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 5.465 s] [INFO] Apache cTAKES Smoking Status ....................... SKIPPED [INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 4.660 s] [INFO] Apache cTAKES Assertion's zoner .................... SKIPPED [INFO] ctakes-examples-res ................................ SUCCESS [ 10.126 s] [INFO] ctakes-examples .................................... SKIPPED [INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 8.447 s] [INFO] Apache cTAKES YTEX ................................. SKIPPED [INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED [INFO] Apache cTAKES YTEX Web ............................. SKIPPED [INFO] Apache cTAKES Distribution ......................... SKIPPED [INFO] Apache cTAKES Regression-test ...................... SKIPPED [INFO] Apache cTAKES template filler ...................... SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 05:33 min [INFO] Finished at: 2017-11-16T20:17:35Z [INFO] Final Memory: 51M/256M [INFO] ------------------------------------------------------------------------ [ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-core: Compilation failure: Compilation failure: [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FilesInDirectoryCollectionReader.java>:[113,26] [deprecation] locateFile(String) in FileLocator has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/PatientNoteCollector.java>:[37,36] error: cannot find symbol [ERROR] symbol: method addDocument(JCas) [ERROR] location: class PatientNoteStore [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/PersonTitleFSM.java>:[121,28] [deprecation] Integer(int) in Integer has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FileTreeReader.java>:[126,39] error: cannot find symbol [ERROR] symbol: method setDocCount(String,int) [ERROR] location: class PatientNoteStore [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FileTreeReader.java>:[130,78] error: cannot find symbol [ERROR] symbol: method setDocCount(String,Integer) [ERROR] location: class PatientNoteStore [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/DateFSM.java>:[272,28] [deprecation] Integer(int) in Integer has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/util/ListIterable.java>:[34,50] [unchecked] unchecked cast [ERROR] required: T [ERROR] found: TOP [ERROR] where T is a type-variable: [ERROR] T extends Object declared in class FSListIterator [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cc/HtmlTableCasConsumer.java>:[93,41] [deprecation] Integer(int) in Integer has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cc/HtmlTableCasConsumer.java>:[234,22] [deprecation] Integer(int) in Integer has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cc/HtmlTableCasConsumer.java>:[337,27] [deprecation] Integer(int) in Integer has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cc/HtmlTableCasConsumer.java>:[338,27] [deprecation] Integer(int) in Integer has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/resource/StringIntegerMapResourceImpl.java>:[72,40] [deprecation] Integer(String) in Integer has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/MeasurementFSM.java>:[247,17] [deprecation] Integer(int) in Integer has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/MeasurementFSM.java>:[256,17] [deprecation] Integer(int) in Integer has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/MeasurementFSM.java>:[284,28] [deprecation] Integer(int) in Integer has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/sentence/SentenceDetectorCtakes.java>:[77,37] [deprecation] Double(double) in Double has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/sentence/SentenceDetectorCtakes.java>:[189,25] [deprecation] Double(double) in Double has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/ae/SentenceDetector.java>:[314,30] [deprecation] train(String,ObjectStream<SentenceSample>,boolean,Dictionary,TrainingParameters) in SentenceDetectorME has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/sentence/EndOfSentenceScannerImpl.java>:[66,19] [deprecation] Integer(int) in Integer has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cc/TokenFreqCasConsumer.java>:[143,47] [deprecation] Integer(int) in Integer has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/RangeFSM.java>:[147,17] [deprecation] Integer(int) in Integer has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/RangeFSM.java>:[156,17] [deprecation] Integer(int) in Integer has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/RangeFSM.java>:[184,28] [deprecation] Integer(int) in Integer has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/FractionFSM.java>:[170,28] [deprecation] Integer(int) in Integer has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/JdbcCollectionReader.java>:[177,25] [unchecked] unchecked conversion [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/NegationFSM.java>:[386,28] [deprecation] Integer(int) in Integer has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/AbstractPatientConsumer.java>:[66,77] error: cannot find symbol [ERROR] symbol: method getPatientIds() [ERROR] location: class PatientNoteStore [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/AbstractPatientConsumer.java>:[87,55] error: cannot find symbol [ERROR] symbol: method getPatientCas(String) [ERROR] location: class PatientNoteStore [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/ci/HyphenTextModifierImpl.java>:[76,45] [deprecation] Integer(int) in Integer has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/ci/HyphenTextModifierImpl.java>:[113,45] [deprecation] Integer(int) in Integer has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/resource/JdbcConnectionResourceImpl.java>:[92,22] [deprecation] Boolean(String) in Boolean has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/TimeFSM.java>:[150,28] [deprecation] Integer(int) in Integer has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/RomanNumeralFSM.java>:[106,28] [deprecation] Integer(int) in Integer has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/ctakes-core/src/main/java/org/apache/ctakes/core/fsm/machine/StatusIndicatorFSM.java>:[228,41] [deprecation] Integer(int) in Integer has been deprecated [ERROR] -> [Help 1] [ERROR] [ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch. [ERROR] Re-run Maven using the -X switch to enable full debug logging. [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException [ERROR] [ERROR] After correcting the problems, you can resume the build with the command [ERROR] mvn <goals> -rf :ctakes-core Sending e-mails to: [email protected] [email protected] channel stopped
