Sorry Robert, My email sent to mail-list bounced back 5 times. Shawn
_____________________________________________ From: Gong, Shawn (Contractor) Sent: Friday, May 18, 2007 5:05 PM To: '[EMAIL PROTECTED]' Subject: RE: [Numpy-discussion] Linux numpy 1.0.1 install failed Hi Robert, I added ref to site.cfg, but still getting the same error message: see "out.txt" file. It seems that install can't find the libraries in /usr/local/lib/atlas/ (see the "out.txt" file Line 14: libraries lapack,blas not found in /usr/local/lib/atlas) Shawn <<out.txt>> <<site.cfg>>
F2PY Version 2_3473 blas_opt_info: blas_mkl_info: libraries mkl,vml,guide not found in /home/sgong/dev/dist/lib libraries mkl,vml,guide not found in /usr/local/lib libraries mkl,vml,guide not found in /usr/lib NOT AVAILABLE atlas_blas_threads_info: Setting PTATLAS=ATLAS libraries lapack,blas not found in /usr/local/lib/atlas libraries lapack,blas not found in /usr/local/lib/atlas/ libraries lapack,blas not found in /home/sgong/dev/dist/lib libraries lapack,blas not found in /usr/local/lib/atlas libraries lapack,blas not found in /usr/local/lib Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS FOUND: libraries = ['lapack', 'blas'] library_dirs = ['/usr/lib'] language = c Could not locate executable gfortran Could not locate executable f95 customize GnuFCompiler customize GnuFCompiler customize GnuFCompiler using config compiling '_configtest.c': /* This file is generated from numpy_distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: gcc -fno-strict-aliasing -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -fPIC compile options: '-c' gcc: _configtest.c gcc _configtest.o -L/usr/lib -llapack -lblas -o _configtest _configtest.o(.text+0x15): In function `main': /home/sgong/dev/numpy-1.0.1/_configtest.c:5: undefined reference to `ATL_buildinfo' /usr/lib/liblapack.so: undefined reference to `e_wsfe' /usr/lib/liblapack.so: undefined reference to `z_abs' /usr/lib/liblapack.so: undefined reference to `c_sqrt' /usr/lib/liblapack.so: undefined reference to `s_cmp' /usr/lib/liblapack.so: undefined reference to `z_exp' /usr/lib/liblapack.so: undefined reference to `c_exp' /usr/lib/liblapack.so: undefined reference to `etime_' /usr/lib/liblapack.so: undefined reference to `do_fio' /usr/lib/liblapack.so: undefined reference to `z_sqrt' /usr/lib/liblapack.so: undefined reference to `s_cat' /usr/lib/liblapack.so: undefined reference to `s_stop' /usr/lib/liblapack.so: undefined reference to `c_abs' /usr/lib/liblapack.so: undefined reference to `s_wsfe' /usr/lib/liblapack.so: undefined reference to `s_copy' collect2: ld returned 1 exit status _configtest.o(.text+0x15): In function `main': /home/sgong/dev/numpy-1.0.1/_configtest.c:5: undefined reference to `ATL_buildinfo' /usr/lib/liblapack.so: undefined reference to `e_wsfe' /usr/lib/liblapack.so: undefined reference to `z_abs' /usr/lib/liblapack.so: undefined reference to `c_sqrt' /usr/lib/liblapack.so: undefined reference to `s_cmp' /usr/lib/liblapack.so: undefined reference to `z_exp' /usr/lib/liblapack.so: undefined reference to `c_exp' /usr/lib/liblapack.so: undefined reference to `etime_' /usr/lib/liblapack.so: undefined reference to `do_fio' /usr/lib/liblapack.so: undefined reference to `z_sqrt' /usr/lib/liblapack.so: undefined reference to `s_cat' /usr/lib/liblapack.so: undefined reference to `s_stop' /usr/lib/liblapack.so: undefined reference to `c_abs' /usr/lib/liblapack.so: undefined reference to `s_wsfe' /usr/lib/liblapack.so: undefined reference to `s_copy' collect2: ld returned 1 exit status failure. removing: _configtest.c _configtest.o Status: 255 Output: FOUND: libraries = ['lapack', 'blas'] library_dirs = ['/usr/lib'] language = c define_macros = [('NO_ATLAS_INFO', 2)] lapack_opt_info: lapack_mkl_info: mkl_info: libraries mkl,vml,guide not found in /home/sgong/dev/dist/lib libraries mkl,vml,guide not found in /usr/local/lib libraries mkl,vml,guide not found in /usr/lib NOT AVAILABLE NOT AVAILABLE atlas_threads_info: Setting PTATLAS=ATLAS libraries lapack,blas not found in /usr/local/lib/atlas libraries lapack_atlas not found in /usr/local/lib/atlas libraries lapack,blas not found in /usr/local/lib/atlas/ libraries lapack_atlas not found in /usr/local/lib/atlas/ libraries lapack,blas not found in /home/sgong/dev/dist/lib libraries lapack_atlas not found in /home/sgong/dev/dist/lib libraries lapack,blas not found in /usr/local/lib/atlas libraries lapack_atlas not found in /usr/local/lib/atlas libraries lapack,blas not found in /usr/local/lib libraries lapack_atlas not found in /usr/local/lib libraries lapack_atlas not found in /usr/lib numpy.distutils.system_info.atlas_threads_info Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS FOUND: libraries = ['lapack', 'lapack', 'blas'] library_dirs = ['/usr/lib'] language = c customize GnuFCompiler customize GnuFCompiler customize GnuFCompiler using config compiling '_configtest.c': /* This file is generated from numpy_distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: gcc -fno-strict-aliasing -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -fPIC compile options: '-c' gcc: _configtest.c gcc _configtest.o -L/usr/lib -llapack -llapack -lblas -o _configtest _configtest.o(.text+0x15): In function `main': /home/sgong/dev/numpy-1.0.1/_configtest.c:5: undefined reference to `ATL_buildinfo' /usr/lib/liblapack.so: undefined reference to `e_wsfe' /usr/lib/liblapack.so: undefined reference to `z_abs' /usr/lib/liblapack.so: undefined reference to `c_sqrt' /usr/lib/liblapack.so: undefined reference to `s_cmp' /usr/lib/liblapack.so: undefined reference to `z_exp' /usr/lib/liblapack.so: undefined reference to `c_exp' /usr/lib/liblapack.so: undefined reference to `etime_' /usr/lib/liblapack.so: undefined reference to `do_fio' /usr/lib/liblapack.so: undefined reference to `z_sqrt' /usr/lib/liblapack.so: undefined reference to `s_cat' /usr/lib/liblapack.so: undefined reference to `s_stop' /usr/lib/liblapack.so: undefined reference to `c_abs' /usr/lib/liblapack.so: undefined reference to `s_wsfe' /usr/lib/liblapack.so: undefined reference to `s_copy' collect2: ld returned 1 exit status _configtest.o(.text+0x15): In function `main': /home/sgong/dev/numpy-1.0.1/_configtest.c:5: undefined reference to `ATL_buildinfo' /usr/lib/liblapack.so: undefined reference to `e_wsfe' /usr/lib/liblapack.so: undefined reference to `z_abs' /usr/lib/liblapack.so: undefined reference to `c_sqrt' /usr/lib/liblapack.so: undefined reference to `s_cmp' /usr/lib/liblapack.so: undefined reference to `z_exp' /usr/lib/liblapack.so: undefined reference to `c_exp' /usr/lib/liblapack.so: undefined reference to `etime_' /usr/lib/liblapack.so: undefined reference to `do_fio' /usr/lib/liblapack.so: undefined reference to `z_sqrt' /usr/lib/liblapack.so: undefined reference to `s_cat' /usr/lib/liblapack.so: undefined reference to `s_stop' /usr/lib/liblapack.so: undefined reference to `c_abs' /usr/lib/liblapack.so: undefined reference to `s_wsfe' /usr/lib/liblapack.so: undefined reference to `s_copy' collect2: ld returned 1 exit status failure. removing: _configtest.c _configtest.o Status: 255 Output: FOUND: libraries = ['lapack', 'lapack', 'blas'] library_dirs = ['/usr/lib'] language = c define_macros = [('NO_ATLAS_INFO', 2)] running install running build running config_fc running build_src building py_modules sources building extension "numpy.core.multiarray" sources adding 'build/src.linux-i686-2.3/numpy/core/config.h' to sources. executing numpy/core/code_generators/generate_array_api.py adding 'build/src.linux-i686-2.3/numpy/core/__multiarray_api.h' to sources. adding 'build/src.linux-i686-2.3/numpy/core/src' to include_dirs. numpy.core - nothing done with h_files= ['build/src.linux-i686-2.3/numpy/core/src/scalartypes.inc', 'build/src.linux-i686-2.3/numpy/core/src/arraytypes.inc', 'build/src.linux-i686-2.3/numpy/core/config.h', 'build/src.linux-i686-2.3/numpy/core/__multiarray_api.h'] building extension "numpy.core.umath" sources adding 'build/src.linux-i686-2.3/numpy/core/config.h' to sources. executing numpy/core/code_generators/generate_ufunc_api.py adding 'build/src.linux-i686-2.3/numpy/core/__ufunc_api.h' to sources. adding 'build/src.linux-i686-2.3/numpy/core/src' to include_dirs. numpy.core - nothing done with h_files= ['build/src.linux-i686-2.3/numpy/core/src/scalartypes.inc', 'build/src.linux-i686-2.3/numpy/core/src/arraytypes.inc', 'build/src.linux-i686-2.3/numpy/core/config.h', 'build/src.linux-i686-2.3/numpy/core/__ufunc_api.h'] building extension "numpy.core._sort" sources adding 'build/src.linux-i686-2.3/numpy/core/config.h' to sources. executing numpy/core/code_generators/generate_array_api.py adding 'build/src.linux-i686-2.3/numpy/core/__multiarray_api.h' to sources. numpy.core - nothing done with h_files= ['build/src.linux-i686-2.3/numpy/core/config.h', 'build/src.linux-i686-2.3/numpy/core/__multiarray_api.h'] building extension "numpy.core.scalarmath" sources adding 'build/src.linux-i686-2.3/numpy/core/config.h' to sources. executing numpy/core/code_generators/generate_array_api.py adding 'build/src.linux-i686-2.3/numpy/core/__multiarray_api.h' to sources. executing numpy/core/code_generators/generate_ufunc_api.py adding 'build/src.linux-i686-2.3/numpy/core/__ufunc_api.h' to sources. numpy.core - nothing done with h_files= ['build/src.linux-i686-2.3/numpy/core/config.h', 'build/src.linux-i686-2.3/numpy/core/__multiarray_api.h', 'build/src.linux-i686-2.3/numpy/core/__ufunc_api.h'] building extension "numpy.core._dotblas" sources adding 'numpy/core/blasdot/_dotblas.c' to sources. building extension "numpy.lib._compiled_base" sources building extension "numpy.numarray._capi" sources building extension "numpy.fft.fftpack_lite" sources building extension "numpy.linalg.lapack_lite" sources adding 'numpy/linalg/lapack_litemodule.c' to sources. building extension "numpy.random.mtrand" sources customize GnuFCompiler customize GnuFCompiler customize GnuFCompiler using config C compiler: gcc -fno-strict-aliasing -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -fPIC compile options: '-Inumpy/core/src -Inumpy/core/include -I/home/sgong/dev/dist/include/python2.3 -c' gcc: _configtest.c _configtest.c:7:2: #error No _WIN32 _configtest.c:7:2: #error No _WIN32 failure. removing: _configtest.c _configtest.o building data_files sources running build_py copying build/src.linux-i686-2.3/numpy/__config__.py -> build/lib.linux-i686-2.3/numpy copying build/src.linux-i686-2.3/numpy/distutils/__config__.py -> build/lib.linux-i686-2.3/numpy/distutils running build_ext customize UnixCCompiler customize UnixCCompiler using build_ext running build_scripts adding 'build/scripts.linux-i686-2.3/f2py' to scripts running install_lib copying build/lib.linux-i686-2.3/numpy/__config__.py -> /home/sgong/dev/dist/lib/python2.3/site-packages/numpy copying build/lib.linux-i686-2.3/numpy/distutils/__config__.py -> /home/sgong/dev/dist/lib/python2.3/site-packages/numpy/distutils byte-compiling /home/sgong/dev/dist/lib/python2.3/site-packages/numpy/__config__.py to __config__.pyc byte-compiling /home/sgong/dev/dist/lib/python2.3/site-packages/numpy/distutils/__config__.py to __config__.pyc running install_scripts changing mode of /home/sgong/dev/dist/bin/f2py to 755 running install_data copying build/src.linux-i686-2.3/numpy/core/__multiarray_api.h -> /home/sgong/dev/dist/lib/python2.3/site-packages/numpy/core/include/numpy copying build/src.linux-i686-2.3/numpy/core/multiarray_api.txt -> /home/sgong/dev/dist/lib/python2.3/site-packages/numpy/core/include/numpy copying build/src.linux-i686-2.3/numpy/core/__ufunc_api.h -> /home/sgong/dev/dist/lib/python2.3/site-packages/numpy/core/include/numpy copying build/src.linux-i686-2.3/numpy/core/ufunc_api.txt -> /home/sgong/dev/dist/lib/python2.3/site-packages/numpy/core/include/numpy
site.cfg
Description: site.cfg
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