David Cournapeau wrote:
IOW, I don't think the problem is the numbers themselves. It has to be
something else. A simple profiling like
python -m cProfile -o foo.stats foo.py
and then:
python -c "import pstats; p = pstats.Stats("foo.stats");
p.sort_stats('cumulative').print_stats(50)"
OK, see the results -- I think (though i may be wrong) this means that
the problem isn't in finding the numpy package:
As for Shark, I'm sorry I missed that message, but I'm trying to see if
I can do that now -- I don't seem to have Shark installed, and the ADC
site doesn't seem to be working, but I'll keep looking.
Thanks for all your help with this...
-Chris
--
Christopher Barker, Ph.D.
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Fri Aug 1 15:14:10 2008 ImportNumpy.stats
26987 function calls (26098 primitive calls) in 5.150 CPU seconds
Ordered by: cumulative time
List reduced from 631 to 50 due to restriction <50>
ncalls tottime percall cumtime percall filename:lineno(function)
1 0.000 0.000 5.151 5.151 {execfile}
1 0.036 0.036 5.151 5.151 ImportNumpy.py:1(<module>)
1 0.146 0.146 5.115 5.115
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/numpy/__init__.py:63(<module>)
1 0.026 0.026 3.941 3.941
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/numpy/add_newdocs.py:9(<module>)
1 0.064 0.064 3.903 3.903
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/numpy/lib/__init__.py:1(<module>)
1 0.179 0.179 2.077 2.077
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/numpy/lib/io.py:1(<module>)
1 0.483 0.483 1.735 1.735
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/numpy/lib/_datasource.py:33(<module>)
1 0.035 0.035 1.582 1.582
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/numpy/lib/type_check.py:3(<module>)
1 0.112 0.112 1.547 1.547
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/numpy/core/__init__.py:2(<module>)
1 0.010 0.010 1.348 1.348
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/numpy/core/defmatrix.py:1(<module>)
1 0.302 0.302 1.338 1.338
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/numpy/lib/utils.py:1(<module>)
1 0.518 0.518 1.236 1.236
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/urllib2.py:74(<module>)
1 0.012 0.012 0.696 0.696
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/numpy/testing/__init__.py:2(<module>)
1 0.327 0.327 0.683 0.683
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/numpy/testing/numpytest.py:1(<module>)
1 0.011 0.011 0.681 0.681
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/compiler/__init__.py:22(<module>)
1 0.447 0.447 0.650 0.650
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/httplib.py:67(<module>)
1 0.351 0.351 0.356 0.356
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/compiler/transformer.py:9(<module>)
1 0.012 0.012 0.314 0.314
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/compiler/pycodegen.py:1(<module>)
1 0.181 0.181 0.300 0.300
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/compiler/pyassem.py:1(<module>)
1 0.162 0.162 0.205 0.205
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/inspect.py:24(<module>)
1 0.061 0.061 0.194 0.194
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/numpy/testing/utils.py:3(<module>)
1 0.163 0.163 0.163 0.163
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/mimetools.py:1(<module>)
1 0.131 0.131 0.163 0.163
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/tempfile.py:18(<module>)
1 0.161 0.161 0.162 0.162
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/unittest.py:45(<module>)
1 0.131 0.131 0.149 0.149
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/pydoc.py:35(<module>)
1 0.117 0.117 0.132 0.132
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/difflib.py:29(<module>)
1 0.061 0.061 0.122 0.122
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/numpy/_import_tools.py:2(<module>)
1 0.067 0.067 0.121 0.121
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/numpy/ctypeslib.py:1(<module>)
1 0.118 0.118 0.119 0.119
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/dis.py:1(<module>)
1 0.009 0.009 0.100 0.100
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/numpy/lib/polynomial.py:3(<module>)
3 0.000 0.000 0.080 0.027
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/numpy/lib/getlimits.py:36(__new__)
2 0.000 0.000 0.080 0.040
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/numpy/lib/getlimits.py:63(_init)
2 0.000 0.000 0.080 0.040
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/numpy/lib/machar.py:51(__init__)
2 0.051 0.026 0.080 0.040
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/numpy/lib/machar.py:70(_do_init)
1 0.026 0.026 0.079 0.079
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/numpy/lib/index_tricks.py:1(<module>)
1 0.052 0.052 0.063 0.063
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/numpy/core/numeric.py:1(<module>)
1 0.060 0.060 0.061 0.061
/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/glob.py:1(<module>)
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