can you run this and post the build.log to pastebin.com: assuming your numpy build directory is /home/numpy-1.3.0:
cd /home/numpy-1.3.0 rm -rf build python setup.py build &&> build.log Chris On Sat, Jun 6, 2009 at 1:37 PM, Richard Llewellyn<[email protected]> wrote: > Hi Chris, > thanks much for posting those installation instructions. Seems similar to > what I pieced together. > > I gather ATLAS not found. Oops, drank that beer too early. > > I copied Atlas libs to /usr/local/rich/src/scipy_build/lib. > > This is my site.cfg. Out of desperation I tried search_static_first = 1, > but probably of no use. > > [DEFAULT] > library_dirs = /usr/local/rich/src/scipy_build/lib:$HOME/usr/galois/lib > include_dirs = > /usr/local/rich/src/scipy_build/lib/include:$HOME/usr/galois/include > search_static_first = 1 > > [blas_opt] > libraries = f77blas, cblas, atlas > > [lapack_opt] > libraries = lapack, f77blas, cblas, atlas > > [amd] > amd_libs = amd > > [umfpack] > umfpack_libs = umfpack, gfortran > > [fftw] > libraries = fftw3 > > > Rich > > > > > On Sat, Jun 6, 2009 at 10:25 AM, Chris Colbert <[email protected]> wrote: >> >> when you build numpy, did you use site.cfg to tell it where to find >> your atlas libs? >> >> On Sat, Jun 6, 2009 at 1:02 PM, Richard Llewellyn<[email protected]> >> wrote: >> > Hello, >> > >> > I've managed a build of lapack and atlas on Fedora 10 on a quad core, >> > 64, >> > and now (...) have a numpy I can import that runs tests ok. :] I am >> > puzzled, however, that numpy builds and imports lapack_lite. Does this >> > mean >> > I have a problem with the build(s)? >> > Upon building numpy, I see the troubling output: >> > >> > ######################## >> > >> > C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe >> > -Wall >> > -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protecto >> > r --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC >> > -fPIC >> > >> > compile options: '-c' >> > gcc: _configtest.c >> > gcc -pthread _configtest.o -L/usr/local/rich/src/scipy_build/lib >> > -llapack >> > -lptf77blas -lptcblas -latlas -o _configtest >> > /usr/bin/ld: _configtest: hidden symbol `__powidf2' in >> > /usr/lib/gcc/x86_64-redhat-linux/4.3.2/libgcc.a(_powidf2.o) is reference >> > d by DSO >> > /usr/bin/ld: final link failed: Nonrepresentable section on output >> > collect2: ld returned 1 exit status >> > /usr/bin/ld: _configtest: hidden symbol `__powidf2' in >> > /usr/lib/gcc/x86_64-redhat-linux/4.3.2/libgcc.a(_powidf2.o) is reference >> > d by DSO >> > /usr/bin/ld: final link failed: Nonrepresentable section on output >> > collect2: ld returned 1 exit status >> > failure. >> > removing: _configtest.c _configtest.o >> > Status: 255 >> > Output: >> > FOUND: >> > libraries = ['lapack', 'ptf77blas', 'ptcblas', 'atlas'] >> > library_dirs = ['/usr/local/rich/src/scipy_build/lib'] >> > language = f77 >> > define_macros = [('NO_ATLAS_INFO', 2)] >> > >> > ########################## >> > >> > I don't have root on this machine, but could pester admins for eventual >> > temporary access. >> > >> > Thanks much for any help, >> > Rich >> > >> > _______________________________________________ >> > Numpy-discussion mailing list >> > [email protected] >> > http://mail.scipy.org/mailman/listinfo/numpy-discussion >> > >> > >> _______________________________________________ >> Numpy-discussion mailing list >> [email protected] >> http://mail.scipy.org/mailman/listinfo/numpy-discussion > > > _______________________________________________ > Numpy-discussion mailing list > [email protected] > http://mail.scipy.org/mailman/listinfo/numpy-discussion > > _______________________________________________ Numpy-discussion mailing list [email protected] http://mail.scipy.org/mailman/listinfo/numpy-discussion
