and where exactly are you seeing atlas not found? during the build process, are when import numpy in python?
if its the latter, you need to add a .conf file in /etc/ld.so.conf.d/ with the line /usr/local/rich/src/scipy_build/lib and then run sudo ldconfig Chris On Sat, Jun 6, 2009 at 1:42 PM, Chris Colbert<[email protected]> wrote: > can you run this and post the build.log to pastebin.com: > > assuming your numpy build directory is /home/numpy-1.3.0: > > cd /home/numpy-1.3.0 > rm -rf build > python setup.py build &&> build.log > > > Chris > > > On Sat, Jun 6, 2009 at 1:37 PM, Richard Llewellyn<[email protected]> wrote: >> Hi Chris, >> thanks much for posting those installation instructions. Seems similar to >> what I pieced together. >> >> I gather ATLAS not found. Oops, drank that beer too early. >> >> I copied Atlas libs to /usr/local/rich/src/scipy_build/lib. >> >> This is my site.cfg. Out of desperation I tried search_static_first = 1, >> but probably of no use. >> >> [DEFAULT] >> library_dirs = /usr/local/rich/src/scipy_build/lib:$HOME/usr/galois/lib >> include_dirs = >> /usr/local/rich/src/scipy_build/lib/include:$HOME/usr/galois/include >> search_static_first = 1 >> >> [blas_opt] >> libraries = f77blas, cblas, atlas >> >> [lapack_opt] >> libraries = lapack, f77blas, cblas, atlas >> >> [amd] >> amd_libs = amd >> >> [umfpack] >> umfpack_libs = umfpack, gfortran >> >> [fftw] >> libraries = fftw3 >> >> >> Rich >> >> >> >> >> On Sat, Jun 6, 2009 at 10:25 AM, Chris Colbert <[email protected]> wrote: >>> >>> when you build numpy, did you use site.cfg to tell it where to find >>> your atlas libs? >>> >>> On Sat, Jun 6, 2009 at 1:02 PM, Richard Llewellyn<[email protected]> >>> wrote: >>> > Hello, >>> > >>> > I've managed a build of lapack and atlas on Fedora 10 on a quad core, >>> > 64, >>> > and now (...) have a numpy I can import that runs tests ok. :] I am >>> > puzzled, however, that numpy builds and imports lapack_lite. Does this >>> > mean >>> > I have a problem with the build(s)? >>> > Upon building numpy, I see the troubling output: >>> > >>> > ######################## >>> > >>> > C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -g -pipe >>> > -Wall >>> > -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protecto >>> > r --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC >>> > -fPIC >>> > >>> > compile options: '-c' >>> > gcc: _configtest.c >>> > gcc -pthread _configtest.o -L/usr/local/rich/src/scipy_build/lib >>> > -llapack >>> > -lptf77blas -lptcblas -latlas -o _configtest >>> > /usr/bin/ld: _configtest: hidden symbol `__powidf2' in >>> > /usr/lib/gcc/x86_64-redhat-linux/4.3.2/libgcc.a(_powidf2.o) is reference >>> > d by DSO >>> > /usr/bin/ld: final link failed: Nonrepresentable section on output >>> > collect2: ld returned 1 exit status >>> > /usr/bin/ld: _configtest: hidden symbol `__powidf2' in >>> > /usr/lib/gcc/x86_64-redhat-linux/4.3.2/libgcc.a(_powidf2.o) is reference >>> > d by DSO >>> > /usr/bin/ld: final link failed: Nonrepresentable section on output >>> > collect2: ld returned 1 exit status >>> > failure. >>> > removing: _configtest.c _configtest.o >>> > Status: 255 >>> > Output: >>> > FOUND: >>> > libraries = ['lapack', 'ptf77blas', 'ptcblas', 'atlas'] >>> > library_dirs = ['/usr/local/rich/src/scipy_build/lib'] >>> > language = f77 >>> > define_macros = [('NO_ATLAS_INFO', 2)] >>> > >>> > ########################## >>> > >>> > I don't have root on this machine, but could pester admins for eventual >>> > temporary access. >>> > >>> > Thanks much for any help, >>> > Rich >>> > >>> > _______________________________________________ >>> > Numpy-discussion mailing list >>> > [email protected] >>> > http://mail.scipy.org/mailman/listinfo/numpy-discussion >>> > >>> > >>> _______________________________________________ >>> Numpy-discussion mailing list >>> [email protected] >>> http://mail.scipy.org/mailman/listinfo/numpy-discussion >> >> >> _______________________________________________ >> Numpy-discussion mailing list >> [email protected] >> http://mail.scipy.org/mailman/listinfo/numpy-discussion >> >> > _______________________________________________ Numpy-discussion mailing list [email protected] http://mail.scipy.org/mailman/listinfo/numpy-discussion
