Did you install Python through Homebrew already? -- Please do not email me anything that you are not comfortable also sharing with the NSA.
On Sep 16, 2013, at 10:06 AM, Ian Danforth <[email protected]> wrote: > I started by removing $NTA and $NUPIC and doing a fresh checkout and have > done a clean build several times. Rather than go to the extreme length of > reinstalling python, I'd like to track down the root cause of this issue so > that a fix can be automated. > > Ian > > > On Mon, Sep 16, 2013 at 5:43 AM, Tao Effect <[email protected]> wrote: > These errors look identical to what I was running into and managed to fix in > a recent pull request that was merged a few weeks ago. > > I would recommend installing Python using Homebrew and then doing a clean > build of NuPIC (i.e. deleting the nta folder). > > Kind regards, > Greg Slepak > > — @taoffect on GitHub and elsewhere > > -- > Please do not email me anything that you are not comfortable also sharing > with the NSA. > > On Sep 16, 2013, at 12:15 AM, Ian Danforth <[email protected]> wrote: > >> Matt, >> >> I ran 'sudo pip unintsall matplotlib' and this made python fall back to the >> version supplied by NuPIC, which is version .98.5.2 (released 2008!). And >> that let me import pylab and get run_tests.sh complete. Going to rebuild and >> see if it clears up any other issues. >> >> Ian >> >> >> On Sun, Sep 15, 2013 at 9:02 PM, Ian Danforth <[email protected]> >> wrote: >> Matt, >> >> Can you reply with your output for these versions if you have them? Numpy, >> matplotlib, scipy, and scikit-learn are not happy on my system and you might >> be in a similar situation. >> >> Ian >> >> >>> import numpy >> >>> import matplotlib >> >>> import scipy >> >>> numpy.__version__ >> '1.7.1' >> >>> matplotlib.__version__ >> '1.3.x' >> >>> scipy.__version__ >> '0.13.0.dev-c31f167' >> >>> import sklearn >> RuntimeError: module compiled against API version 8 but this version of >> numpy is 7 >> Traceback (most recent call last): >> File "<stdin>", line 1, in <module> >> File >> "/Library/Python/2.7/site-packages/scikit_learn-0.14_git-py2.7-macosx-10.8-intel.egg/sklearn/__init__.py", >> line 32, in <module> >> from .base import clone >> File >> "/Library/Python/2.7/site-packages/scikit_learn-0.14_git-py2.7-macosx-10.8-intel.egg/sklearn/base.py", >> line 10, in <module> >> from scipy import sparse >> File >> "/Library/Python/2.7/site-packages/scipy-0.13.0.dev_c31f167_20130307-py2.7-macosx-10.8-intel.egg/scipy/sparse/__init__.py", >> line 182, in <module> >> from .csr import * >> File >> "/Library/Python/2.7/site-packages/scipy-0.13.0.dev_c31f167_20130307-py2.7-macosx-10.8-intel.egg/scipy/sparse/csr.py", >> line 15, in <module> >> from .sparsetools import csr_tocsc, csr_tobsr, csr_count_blocks, \ >> File >> "/Library/Python/2.7/site-packages/scipy-0.13.0.dev_c31f167_20130307-py2.7-macosx-10.8-intel.egg/scipy/sparse/sparsetools/__init__.py", >> line 5, in <module> >> from .csr import * >> File >> "/Library/Python/2.7/site-packages/scipy-0.13.0.dev_c31f167_20130307-py2.7-macosx-10.8-intel.egg/scipy/sparse/sparsetools/csr.py", >> line 26, in <module> >> _csr = swig_import_helper() >> File >> "/Library/Python/2.7/site-packages/scipy-0.13.0.dev_c31f167_20130307-py2.7-macosx-10.8-intel.egg/scipy/sparse/sparsetools/csr.py", >> line 22, in swig_import_helper >> _mod = imp.load_module('_csr', fp, pathname, description) >> ImportError: numpy.core.multiarray failed to import >> >>> >> >> >> >> On Sun, Sep 15, 2013 at 8:48 PM, Ian Danforth <[email protected]> >> wrote: >> Matt, >> >> I'm also having issues that end up in "RuntimeError: Could not get valid >> spec for Region: py.RecordSensor" >> >> One thing I see is that "import pylab" fails for me with the same error >> you're seeing, even though importing multiarray in the normal way works. >> Looking into that. >> >> Ian >> >> >> On Sun, Sep 15, 2013 at 8:31 PM, Matt Keith <[email protected]> wrote: >> I used to have a working NuPIC setup on my rMBP running OS X 10.8.4 and >> python 2.7, but last week I pulled the latest code from github and now I get >> an import error when I run any client code. Everything builds fine and it >> even passes htmtest and run_tests.sh. However, when I run the hotgym >> example now I get the following error: >> >> -->python $NUPIC/examples/opf/clients/hotgym/hotgym.py >> ImportError: numpy.core.multiarray failed to import >> ERROR: Could not get valid spec for Region: py.RecordSensor >> [/Users/keith/Development/nupic/nta/engine/RegionImplFactory.cpp line 452] >> Traceback (most recent call last): >> File >> "/Users/keith/Development/nupic/examples/opf/clients/hotgym/hotgym.py", line >> 94, in <module> >> runHotgym() >> File >> "/Users/keith/Development/nupic/examples/opf/clients/hotgym/hotgym.py", line >> 65, in runHotgym >> model = createModel() >> File >> "/Users/keith/Development/nupic/examples/opf/clients/hotgym/hotgym.py", line >> 60, in createModel >> return ModelFactory.create(model_params.MODEL_PARAMS) >> File >> "/Users/keith/Development/nta/eng/lib/python2.7/site-packages/nupic/frameworks/opf/modelfactory.py", >> line 76, in create >> return modelClass(**modelConfig['modelParams']) >> File >> "/Users/keith/Development/nta/eng/lib/python2.7/site-packages/nupic/frameworks/opf/clamodel.py", >> line 203, in __init__ >> anomalyParams) >> File >> "/Users/keith/Development/nta/eng/lib/python2.7/site-packages/nupic/frameworks/opf/clamodel.py", >> line 1078, in __createCLANetwork >> n.addRegion("sensor", "py.RecordSensor", >> json.dumps(dict(verbosity=sensorParams['verbosity']))) >> File >> "/Users/keith/Development/nta/eng/lib/python2.7/site-packages/nupic/engine/__init__.py", >> line 636, in addRegion >> engine.Network.addRegion(self, name, nodeType, nodeParams) >> File >> "/Users/keith/Development/nta/eng/lib/python2.7/site-packages/nupic/bindings/engine_internal.py", >> line 1011, in addRegion >> return _engine_internal.Network_addRegion(*args, **kwargs) >> RuntimeError: Could not get valid spec for Region: py.RecordSensor >> >> Is anyone else seeing this problem with the latest code? Any ideas as to >> why the multiarray lib won't load? >> >> The .so file was built and exists in the $NAT/eng dir at >> -rwxr-xr-x 1 keith staff 2921728 Sep 15 20:47 >> lib/python2.7/site-packages/numpy/core/multiarray.so >> And the module seems to load fine by hand: >> >>> import numpy >> >>> import numpy.core.multiarray >> >>> numpy.__version__ >> '1.7.1' >> >>> numpy.core.multiarray.__version__ >> '3.1' >> >> Let me know if you would like any output from the stdout.txt file from the >> build. >> >> Thanks, >> >> Matt >> _______________________________________________ >> nupic mailing list >> [email protected] >> http://lists.numenta.org/mailman/listinfo/nupic_lists.numenta.org >> >> >> >> _______________________________________________ >> nupic mailing list >> [email protected] >> http://lists.numenta.org/mailman/listinfo/nupic_lists.numenta.org > > > _______________________________________________ > nupic mailing list > [email protected] > http://lists.numenta.org/mailman/listinfo/nupic_lists.numenta.org > > > _______________________________________________ > nupic mailing list > [email protected] > http://lists.numenta.org/mailman/listinfo/nupic_lists.numenta.org
signature.asc
Description: Message signed with OpenPGP using GPGMail
_______________________________________________ nupic mailing list [email protected] http://lists.numenta.org/mailman/listinfo/nupic_lists.numenta.org
