Greg, Thanks for the info. I do have pip installed already. Here is the version info: pip 1.4 from /Library/Python/2.7/site-packages/pip-1.4-py2.7.egg (python 2.7)
Matt On Sep 16, 2013, at 9:37 AM, Tao Effect <[email protected]> wrote: > Installing Python through Homebrew will also install pip, which I think is > needed anyway to retrieve the dependencies. > > - Greg > > -- > Please do not email me anything that you are not comfortable also sharing > with the NSA. > > On Sep 16, 2013, at 11:34 AM, Matt Keith <[email protected]> wrote: > >> Ian, >> >> I do not have scipy installed on my system. Here is the output for me: >> >> Python 2.7.2 (default, Oct 11 2012, 20:14:37) >> [GCC 4.2.1 Compatible Apple Clang 4.0 (tags/Apple/clang-418.0.60)] on darwin >> Type "help", "copyright", "credits" or "license" for more information. >> >>> import numpy >> >>> import matplotlib >> >>> import scipy >> Traceback (most recent call last): >> File "<stdin>", line 1, in <module> >> ImportError: No module named scipy >> >>> numpy.__version__ >> '1.7.1' >> >>> matplotlib.__version__ >> '0.98.5.2' >> >> I had this working before and the only thing that changed on my system was >> an update of the nupic source, so it must have been a change in the build >> settings, process or requirements. I have done cleanbuild.sh and tried >> removing $NTA and $NTABUILD dirs by hand, but get the same error. >> >> I would rather not go the homebrew route. I don't think that should be a >> requirement for other contributors and don't want to maintain yet another >> development environment on my system. Hopefully, we can just find the issue >> and resolve it. >> >> Thanks, >> >> Matt >> >> On Sep 16, 2013, at 8:10 AM, Tao Effect <[email protected]> wrote: >> >>> Did you install Python through Homebrew already? >>> >>> -- >>> Please do not email me anything that you are not comfortable also sharing >>> with the NSA. >>> >>> On Sep 16, 2013, at 10:06 AM, Ian Danforth <[email protected]> wrote: >>> >>>> I started by removing $NTA and $NUPIC and doing a fresh checkout and have >>>> done a clean build several times. Rather than go to the extreme length of >>>> reinstalling python, I'd like to track down the root cause of this issue >>>> so that a fix can be automated. >>>> >>>> Ian >>>> >>>> >>>> On Mon, Sep 16, 2013 at 5:43 AM, Tao Effect <[email protected]> wrote: >>>> These errors look identical to what I was running into and managed to fix >>>> in a recent pull request that was merged a few weeks ago. >>>> >>>> I would recommend installing Python using Homebrew and then doing a clean >>>> build of NuPIC (i.e. deleting the nta folder). >>>> >>>> Kind regards, >>>> Greg Slepak >>>> >>>> — @taoffect on GitHub and elsewhere >>>> >>>> -- >>>> Please do not email me anything that you are not comfortable also sharing >>>> with the NSA. >>>> >>>> On Sep 16, 2013, at 12:15 AM, Ian Danforth <[email protected]> >>>> wrote: >>>> >>>>> Matt, >>>>> >>>>> I ran 'sudo pip unintsall matplotlib' and this made python fall back to >>>>> the version supplied by NuPIC, which is version .98.5.2 (released 2008!). >>>>> And that let me import pylab and get run_tests.sh complete. Going to >>>>> rebuild and see if it clears up any other issues. >>>>> >>>>> Ian >>>>> >>>>> >>>>> On Sun, Sep 15, 2013 at 9:02 PM, Ian Danforth <[email protected]> >>>>> wrote: >>>>> Matt, >>>>> >>>>> Can you reply with your output for these versions if you have them? >>>>> Numpy, matplotlib, scipy, and scikit-learn are not happy on my system and >>>>> you might be in a similar situation. >>>>> >>>>> Ian >>>>> >>>>> >>> import numpy >>>>> >>> import matplotlib >>>>> >>> import scipy >>>>> >>> numpy.__version__ >>>>> '1.7.1' >>>>> >>> matplotlib.__version__ >>>>> '1.3.x' >>>>> >>> scipy.__version__ >>>>> '0.13.0.dev-c31f167' >>>>> >>> import sklearn >>>>> RuntimeError: module compiled against API version 8 but this version of >>>>> numpy is 7 >>>>> Traceback (most recent call last): >>>>> File "<stdin>", line 1, in <module> >>>>> File >>>>> "/Library/Python/2.7/site-packages/scikit_learn-0.14_git-py2.7-macosx-10.8-intel.egg/sklearn/__init__.py", >>>>> line 32, in <module> >>>>> from .base import clone >>>>> File >>>>> "/Library/Python/2.7/site-packages/scikit_learn-0.14_git-py2.7-macosx-10.8-intel.egg/sklearn/base.py", >>>>> line 10, in <module> >>>>> from scipy import sparse >>>>> File >>>>> "/Library/Python/2.7/site-packages/scipy-0.13.0.dev_c31f167_20130307-py2.7-macosx-10.8-intel.egg/scipy/sparse/__init__.py", >>>>> line 182, in <module> >>>>> from .csr import * >>>>> File >>>>> "/Library/Python/2.7/site-packages/scipy-0.13.0.dev_c31f167_20130307-py2.7-macosx-10.8-intel.egg/scipy/sparse/csr.py", >>>>> line 15, in <module> >>>>> from .sparsetools import csr_tocsc, csr_tobsr, csr_count_blocks, \ >>>>> File >>>>> "/Library/Python/2.7/site-packages/scipy-0.13.0.dev_c31f167_20130307-py2.7-macosx-10.8-intel.egg/scipy/sparse/sparsetools/__init__.py", >>>>> line 5, in <module> >>>>> from .csr import * >>>>> File >>>>> "/Library/Python/2.7/site-packages/scipy-0.13.0.dev_c31f167_20130307-py2.7-macosx-10.8-intel.egg/scipy/sparse/sparsetools/csr.py", >>>>> line 26, in <module> >>>>> _csr = swig_import_helper() >>>>> File >>>>> "/Library/Python/2.7/site-packages/scipy-0.13.0.dev_c31f167_20130307-py2.7-macosx-10.8-intel.egg/scipy/sparse/sparsetools/csr.py", >>>>> line 22, in swig_import_helper >>>>> _mod = imp.load_module('_csr', fp, pathname, description) >>>>> ImportError: numpy.core.multiarray failed to import >>>>> >>> >>>>> >>>>> >>>>> >>>>> On Sun, Sep 15, 2013 at 8:48 PM, Ian Danforth <[email protected]> >>>>> wrote: >>>>> Matt, >>>>> >>>>> I'm also having issues that end up in "RuntimeError: Could not get valid >>>>> spec for Region: py.RecordSensor" >>>>> >>>>> One thing I see is that "import pylab" fails for me with the same error >>>>> you're seeing, even though importing multiarray in the normal way works. >>>>> Looking into that. >>>>> >>>>> Ian >>>>> >>>>> >>>>> On Sun, Sep 15, 2013 at 8:31 PM, Matt Keith <[email protected]> wrote: >>>>> I used to have a working NuPIC setup on my rMBP running OS X 10.8.4 and >>>>> python 2.7, but last week I pulled the latest code from github and now I >>>>> get an import error when I run any client code. Everything builds fine >>>>> and it even passes htmtest and run_tests.sh. However, when I run the >>>>> hotgym example now I get the following error: >>>>> >>>>> -->python $NUPIC/examples/opf/clients/hotgym/hotgym.py >>>>> ImportError: numpy.core.multiarray failed to import >>>>> ERROR: Could not get valid spec for Region: py.RecordSensor >>>>> [/Users/keith/Development/nupic/nta/engine/RegionImplFactory.cpp line 452] >>>>> Traceback (most recent call last): >>>>> File >>>>> "/Users/keith/Development/nupic/examples/opf/clients/hotgym/hotgym.py", >>>>> line 94, in <module> >>>>> runHotgym() >>>>> File >>>>> "/Users/keith/Development/nupic/examples/opf/clients/hotgym/hotgym.py", >>>>> line 65, in runHotgym >>>>> model = createModel() >>>>> File >>>>> "/Users/keith/Development/nupic/examples/opf/clients/hotgym/hotgym.py", >>>>> line 60, in createModel >>>>> return ModelFactory.create(model_params.MODEL_PARAMS) >>>>> File >>>>> "/Users/keith/Development/nta/eng/lib/python2.7/site-packages/nupic/frameworks/opf/modelfactory.py", >>>>> line 76, in create >>>>> return modelClass(**modelConfig['modelParams']) >>>>> File >>>>> "/Users/keith/Development/nta/eng/lib/python2.7/site-packages/nupic/frameworks/opf/clamodel.py", >>>>> line 203, in __init__ >>>>> anomalyParams) >>>>> File >>>>> "/Users/keith/Development/nta/eng/lib/python2.7/site-packages/nupic/frameworks/opf/clamodel.py", >>>>> line 1078, in __createCLANetwork >>>>> n.addRegion("sensor", "py.RecordSensor", >>>>> json.dumps(dict(verbosity=sensorParams['verbosity']))) >>>>> File >>>>> "/Users/keith/Development/nta/eng/lib/python2.7/site-packages/nupic/engine/__init__.py", >>>>> line 636, in addRegion >>>>> engine.Network.addRegion(self, name, nodeType, nodeParams) >>>>> File >>>>> "/Users/keith/Development/nta/eng/lib/python2.7/site-packages/nupic/bindings/engine_internal.py", >>>>> line 1011, in addRegion >>>>> return _engine_internal.Network_addRegion(*args, **kwargs) >>>>> RuntimeError: Could not get valid spec for Region: py.RecordSensor >>>>> >>>>> Is anyone else seeing this problem with the latest code? Any ideas as to >>>>> why the multiarray lib won't load? >>>>> >>>>> The .so file was built and exists in the $NAT/eng dir at >>>>> -rwxr-xr-x 1 keith staff 2921728 Sep 15 20:47 >>>>> lib/python2.7/site-packages/numpy/core/multiarray.so >>>>> And the module seems to load fine by hand: >>>>> >>> import numpy >>>>> >>> import numpy.core.multiarray >>>>> >>> numpy.__version__ >>>>> '1.7.1' >>>>> >>> numpy.core.multiarray.__version__ >>>>> '3.1' >>>>> >>>>> Let me know if you would like any output from the stdout.txt file from >>>>> the build. >>>>> >>>>> Thanks, >>>>> >>>>> Matt >>>>> _______________________________________________ >>>>> nupic mailing list >>>>> [email protected] >>>>> http://lists.numenta.org/mailman/listinfo/nupic_lists.numenta.org >>>>> >>>>> >>>>> >>>>> _______________________________________________ >>>>> nupic mailing list >>>>> [email protected] >>>>> http://lists.numenta.org/mailman/listinfo/nupic_lists.numenta.org >>>> >>>> >>>> _______________________________________________ >>>> nupic mailing list >>>> [email protected] >>>> http://lists.numenta.org/mailman/listinfo/nupic_lists.numenta.org >>>> >>>> >>>> _______________________________________________ >>>> nupic mailing list >>>> [email protected] >>>> http://lists.numenta.org/mailman/listinfo/nupic_lists.numenta.org >>> >>> _______________________________________________ >>> nupic mailing list >>> [email protected] >>> http://lists.numenta.org/mailman/listinfo/nupic_lists.numenta.org >> >> _______________________________________________ >> nupic mailing list >> [email protected] >> http://lists.numenta.org/mailman/listinfo/nupic_lists.numenta.org > > _______________________________________________ > nupic mailing list > [email protected] > http://lists.numenta.org/mailman/listinfo/nupic_lists.numenta.org
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