Hi Matt Taylor I think the test result of "./scripts/run_nupic_tests -u" mentioned in previous email is incorrect. It shows "collecting 170 items / 3 errors". And I need to use the example in $nupic/examples/network/hierarchy_network_demo.py which can run correctly. Do you have any advice? Thank you so much.
Yajingfu ------------------ ???????? ------------------ ??????: "??????";<[email protected]>; ????????: 2015??9??16??(??????) ????10:22 ??????: "??????"<[email protected]>; ????: ?????? ?????? ?????? How to update the newest NuPIC version Hi >>./scripts/run_nupic_tests -u ============================= test session starts ============================== platform linux2 -- Python 2.7.3 -- pytest-2.4.2 -- /usr/bin/python plugins: xdist, cov collecting 170 items / 3 errors >>./scripts/run_nupic_tests -i 73 passed, 5 skipped in 264.26 seconds Yajingfu ------------------ ???????? ------------------ ??????: "Matthew Taylor";<[email protected]>; ????????: 2015??9??15??(??????) ????10:22 ??????: "??????"<[email protected]>; ????: Re: ?????? ?????? How to update the newest NuPIC version Test it like this: Unit tests: ./scripts/run_nupic_tests -u Integration tests: ./scripts/run_nupic_tests -i --------- Matt Taylor OS Community Flag-Bearer Numenta On Mon, Sep 14, 2015 at 11:44 PM, ?????? <[email protected]> wrote: > Hi > Matt Taylor > Thank you for your reply. I did just as what you said. The file setup.py has > been complied correctly. Then I tested it. But there is no such directory of > $NUPIC/bin > > abc@abc-VirtualBox:/newdisk$ $NUPIC/bin/py_region_test > bash: /newdisk/nupic/bin/py_region_test: No such file or directory > > And I was intended to run $NUPIC/examples/network/hierachy-demo-output.py > but failed. > > /usr/bin/python2.7 /newdisk/nupic/examples/network/hierarchy_network_demo.py > Creating network > Running network > Writing output to: /newdisk/nupic/examples/network/hierarchy-demo-output.csv > Traceback (most recent call last): > File "/newdisk/nupic/examples/network/hierarchy_network_demo.py", line > 368, in <module> > runDemo() > File "/newdisk/nupic/examples/network/hierarchy_network_demo.py", line > 362, in runDemo > runNetwork(network, numRecords, writer) > File "/newdisk/nupic/examples/network/hierarchy_network_demo.py", line > 305, in runNetwork > network.run(1) > File "/newdisk/nupic/nupic/engine/__init__.py", line 666, in run > engine.Network.run(self, n) > File > "/home/abc/.local/lib/python2.7/site-packages/nupic.bindings-0.1.5-py2.7-linux-x86_64.egg/nupic/bindings/engine_internal.py", > line 1146, in run > return _engine_internal.Network_run(self, *args, **kwargs) > File "/newdisk/nupic/nupic/regions/CLAClassifierRegion.py", line 289, in > compute > categories = [category for category in inputs["categoryIn"] > KeyError: 'categoryIn' > > Yajingfu > > ------------------ ???????? ------------------ > ??????: "Matthew Taylor";<[email protected]>; > ????????: 2015??9??15??(??????) ????12:52 > ??????: "??????"<[email protected]>; > ????: Re: ?????? ?????? How to update the newest NuPIC version > > Sorry, wrong command. > > git reset --hard origin/master > > Sent from my MegaPhone > > On Sep 14, 2015, at 8:58 PM, ?????? <[email protected]> wrote: > > Hi > Matt Taylor > That's very kind of you and thank you for your detailed explanation. But I > can't hard reset. > > abc@abc-VirtualBox:/newdisk/nupic$ git reset --hard origin master > fatal: Cannot do hard reset with paths. > > abc@abc-VirtualBox:/newdisk/nupic$ python --version > Python 2.7.3 > > abc@abc-VirtualBox:/newdisk/nupic$ pip --version > pip 1.0 from /usr/lib/python2.7/dist-packages (python 2.7) > > abc@abc-VirtualBox:/newdisk/nupic$ gcc --version > gcc (Ubuntu 4.8.1-2ubuntu1~12.04) 4.8.1 > Copyright (C) 2013 Free Software Foundation, Inc. > This is free software; see the source for copying conditions. There is NO > warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. > > abc@abc-VirtualBox:/newdisk/nupic$ cat /etc/issue > Ubuntu 12.04.5 LTS \n \l > > I'm confused with so many git commands and not sure what's the meaning of > "checked out" in "assuming $NUPIC is where you have it checked out". Some > info about my nupic are showed as follows: > > abc@abc-VirtualBox:/newdisk/nupic$ git branch -a > * master > remotes/origin/HEAD -> origin/master > remotes/origin/add-nupic-linux64-back > remotes/origin/add_capnp_to_SPRegion > remotes/origin/core-update-09190c1b465a0ef5268cfb40ea03194fd1ee06a5 > remotes/origin/core-update-09f8350ef49aa2404a3aaab32200d99793fb17c4 > remotes/origin/core-update-0a891f27d137825e1d29870cb2a2df7ac33f5b65 > remotes/origin/core-update-0c815c2b84d92d0ca1a81beca2bed7e3d3ce6776 > remotes/origin/core-update-0d5eb8452229a42352e77c69f4300165c3d6f834 > remotes/origin/core-update-140a176ef1f53bb5014e60cec5a26ecc0498d23e > remotes/origin/core-update-241986490135472f5b2a33fc54de41ff3fc90871 > remotes/origin/core-update-26f27da204948ad6858a722627acf700722de195 > remotes/origin/core-update-3b6eeb2af09b8e1f4def918c98b013fe49acea46 > remotes/origin/core-update-3ee66ab918b3673e347f6cd38d92f3498c0a835e > remotes/origin/core-update-412871e85dec5a195f7f59c01ca87100bfd5f346 > remotes/origin/core-update-42d66a13dffc2647ea852ed4d2632f751b66ecf4 > remotes/origin/core-update-4ef1f6e560af555f1f53f457d0400dc4c3a67658 > remotes/origin/core-update-504f3616c52d3809bc056da1726aefc4d1cdacb7 > remotes/origin/core-update-54faae374b409b8874feeeec40b2644eec6cddc1 > remotes/origin/core-update-603ee4b04b3c2b8d444b0b98aef7ff1cfaa4d6c6 > remotes/origin/core-update-60a82001f0f8a6ed2a8097571653bfe0f1976683 > remotes/origin/core-update-633368e394c3de72e93e401efcd8e91ec30abf53 > remotes/origin/core-update-6485cd327fbdcf3bb6d15260468ff5e1da5f9753 > remotes/origin/core-update-66de57d6294575ad36343a8ab8d1e0697e1789dc > remotes/origin/core-update-6729b0a634b3fa74b76fd7065ea0c426b33a0808 > remotes/origin/core-update-69af1b6750198c7b37d974b161bdd0c425fc0a2c > remotes/origin/core-update-6d83da85e1375cb0bc961dc79e95b3269f6ff4ae > remotes/origin/core-update-701eb9a1b57f7da33a3a84f800982915a628c6af > remotes/origin/core-update-706b5682b35e0f78ce1a36c0e7100d109b04ed54 > remotes/origin/core-update-72da8988209e95845bead91b7a91e1312939dd78 > remotes/origin/core-update-7618a54a7f0e7530da5d1f5e4e5a053675d6ad5c > remotes/origin/core-update-78fb04c13f6255cc491a28ac296b9b50c252913a > remotes/origin/core-update-7b51f6c24659b732584b51bc61e85ff34eef4d53 > remotes/origin/core-update-7b9742fa4494dde6a716da0a84fcf791dbcab2b7 > remotes/origin/core-update-82b9a97937b17d9a2c32e9d89bca6e1fe1eea923 > remotes/origin/core-update-908600dc1e8f35a2a5c848e0af2e708948886aeb > remotes/origin/core-update-917f48c0de7c47359c92487db7c4967020140a45 > remotes/origin/core-update-9218471fcdba9ea87b7f372d92d217d9553817a7 > remotes/origin/core-update-a13e5de360287a8c4b63675ca170b9d4556eaedf > remotes/origin/core-update-a23a6df1aff8e475ec6995d8b6f48cae83e8dbb4 > remotes/origin/core-update-a25068f00bde589f029e0cfc94ac3343bfaa9254 > remotes/origin/core-update-a5b35e6619dbfe1130dc4785bf92d7df3fba6cb5 > remotes/origin/core-update-ad25c77d3e30f1029816aabf17ea4d387fff3ea3 > remotes/origin/core-update-b4bdca9627857a5076f7e40f46cba1efa3284872 > remotes/origin/core-update-b70bfd70f9fd7176c160a775533e3b0523d1db7e > remotes/origin/core-update-b71a593077f5e49c780b0002629b5e8966f61b36 > remotes/origin/core-update-bc25849db6815d379afb5b539e27c8565e6417f0 > remotes/origin/core-update-c6f634cabfba545545faa0ef901a566f7a7fd70e > remotes/origin/core-update-cb55ebd9633923040176db0c041945f190d69800 > remotes/origin/core-update-cca41015071df968ba79ab7b9625f68de2cd4e1d > remotes/origin/core-update-d41566a1b1448dcdd3b1a846ce14d18b63be2f18 > remotes/origin/core-update-da34067f70ffcd71aa56781fe0e4aa1ced81ff79 > remotes/origin/core-update-de7052fa535cb55ba97d6dd37950d9aab998b35c > remotes/origin/core-update-eb0b420973f54536debd9d13334a88cdc05bf5c1 > remotes/origin/core-update-f413775712bed847fb94e2abb9c20c546fb4d44c > remotes/origin/core-update-f55119a2f255fa4961b9c44ecb5261076bb4db0a > remotes/origin/core-update-fd7757d57fe4ba873156963f961567a5a6f42f43 > remotes/origin/core-update-ffb81006c38ac9c1bdd2c161c91211d556ec1805 > remotes/origin/master > remotes/origin/revert-1482-scalar-space-encoder > > > abc@abc-VirtualBox:/newdisk/nupic$ git status > # On branch master > # Your branch is ahead of 'origin/master' by 2 commits. > # > # Untracked files: > # (use "git add <file>..." to include in what will be committed) > # > # bin/ > # examples/AD_fyj/ > # examples/fyj/ > # examples/network/hierarchy-demo-output.csv > # examples/network/network-demo-output.csv > # examples/network/test_output.csv > # examples/opf/clients/hotgym/anomaly/anomaly_scores.csv > # examples/opf/clients/hotgym/anomaly/one_gym/rec-center-hourly_out.csv > # > examples/opf/clients/hotgym/prediction/one_gym/model_params/rec_center_hourly_model_params.py > # examples/opf/clients/hotgym/prediction/one_gym/swarm/ > # fake-extension.so > # nupic/bindings/_algorithms.so > # nupic/bindings/_engine_internal.so > # nupic/bindings/_math.so > # nupic/bindings/algorithms.py > # nupic/bindings/algorithms_wrap.cxx > # nupic/bindings/engine_internal.py > # nupic/bindings/engine_internal_wrap.cxx > # nupic/bindings/math.py > # nupic/bindings/math_wrap.cxx > # nupic/bindings/proto/BitHistory.capnp > # nupic/bindings/proto/ClaClassifier.capnp > # nupic/bindings/proto/ConnectionsProto.capnp > # nupic/bindings/proto/RandomProto.capnp > # nupic/bindings/proto/SparseBinaryMatrixProto.capnp > # nupic/bindings/proto/SparseMatrixProto.capnp > # nupic/bindings/proto/SpatialPoolerProto.capnp > # nupic/libcpp_region.so > nothing added to commit but untracked files present (use "git add" to track) > > Yajingfu > ------------------ ???????? ------------------ > ??????: "Matthew Taylor";<[email protected]>; > ????????: 2015??9??15??(??????) ????0:57 > ??????: "??????"<[email protected]>; > ????: Re: ?????? How to update the newest NuPIC version > > Yajingfu, > > Try this, so we can start from scratch. These git commands will ensure > that your working directory is up to date and clean (this will destroy > any local changes you have not committed): > > cd $NUPIC # assuming $NUPIC is where you have it checked out > git fetch origin > git reset --hard origin master > git clean -dfx > > Now again make sure everything is uninstalled: > > pip uninstall nupic -y > pip uninstall nupic.bindings -y > > Run those two commands a few times until they tell you nothing is > installed. Then try to install from scratch: > > python setup.py install > > You may need to add the "--user" option for the command above if you > have permission issues. > > If this does not work, please tell us some extra info: > - python version > - pip version > - OS details (Linux flavor?) > - gcc version > > I hope that helps, > > > > --------- > Matt Taylor > OS Community Flag-Bearer > Numenta > > > On Sun, Sep 13, 2015 at 7:19 PM, ?????? <[email protected]> wrote: >> Hi NuPIC >> I wonder what else I can do for the problem. Can anyone help me? >> Thank >> you so much?? >> >> Yajingfu >> >> >> ------------------ ???????? ------------------ >> ??????: "??????";<[email protected]>; >> ????????: 2015??9??11??(??????) ????11:16 >> ??????: "??????"<[email protected]>; >> ????: ?????? ?????? How to update the newest NuPIC version >> >> Hi >> >> I tried the two commands and had some version conflict. For >> example??VersionConflict: (pytest 2.7.2 >> (/usr/local/lib/python2.7/dist-packages), >> Requirement.parse('pytest==2.4.2'))?? >> >> so I reinstalled them and it shows like this: >> >> abc@abc-VirtualBox:/newdisk$ pip uninstall nupic -y >> Uninstalling nupic: >> Successfully uninstalled nupic >> abc@abc-VirtualBox:/newdisk$ pip uninstall nupic.bindings -y >> Cannot uninstall requirement nupic.bindings, not installed >> Storing complete log in /home/abc/.pip/pip.log >> >> but it still has the same problem: >> >> abc@abc-VirtualBox:/newdisk/nupic$ python setup.py build >> error in nupic setup command: 'install_requires' must be a string or list >> of >> strings containing valid project/version requirement specifiers >> >> What should I do next? >> >> ------------------ ???????? ------------------ >> ??????: "Matthew Taylor";<[email protected]>; >> ????????: 2015??9??11??(??????) ????10:33 >> ??????: "??????"<[email protected]>; >> ????: Re: ?????? How to update the newest NuPIC version >> >> Try uninstalling any old versions of nupic: >> >> https://github.com/numenta/nupic/wiki/Build-and-Installation-FAQ#im-having-trouble-updating-to-a-newer-version-of-nupic >> >> Then run "python setup.py build" again? >> --------- >> Matt Taylor >> OS Community Flag-Bearer >> Numenta >> >> >> On Fri, Sep 11, 2015 at 2:38 AM, ?????? <[email protected]> wrote: >>> >>> HI >>> >>> I took a snapshot before. So I recovered it and installed numpy 1.9.2 and >>> py.test at first successfully. Then I pulled and get the newest version. >>> But it can't be build seccufully. >>> >>> My steps are as follows. >>> >>>>>git commit -a >>>>>git pull >>> remote: Counting objects: 4, done. >>> remote: Compressing objects: 100% (4/4), done. >>> remote: Total 4 (delta 0), reused 0 (delta 0), pack-reused 0 >>> Unpacking objects: 100% (4/4), done. >>> From https://github.com/numenta/nupic >>> f2f1824..e6362c7 master -> origin/master >>> * [new branch] core-update-4ef1f6e560af555f1f53f457d0400dc4c3a67658 >>> -> >>> origin/core-update-4ef1f6e560af555f1f53f457d0400dc4c3a67658 >>> Merge made by the 'recursive' strategy. >>> .nupic_modules | 2 +- >>> 1 file changed, 1 insertion(+), 1 deletion(-) >>> >>>>>python setup.py build >>> error in nupic setup command: 'install_requires' must be a string or list >>> of >>> strings containing valid project/version requirement specifiers >>> >>> It's too strange. I can't solve it. So asking for help. Thank you. :) >>> >>> ------------------ ???????? ------------------ >>> ??????: "Matthew Taylor";<[email protected]>; >>> ????????: 2015??9??10??(??????) ????11:43 >>> ??????: "??????"<[email protected]>; >>> ????: Re: ?????? How to update the newest NuPIC version >>> >>> What does this show? >>> >>>> which pytest >>> >>> >>> --------- >>> Matt Taylor >>> OS Community Flag-Bearer >>> Numenta >>> >>> On Tue, Sep 8, 2015 at 9:24 PM, ?????? <[email protected]> wrote: >>>> >>>> >>>> I searched and found https://github.com/numenta/nupic/issues/2008 was >>>> similar to my problem. So I input command "sudo pip install -U pytest" >>>> depending on http://pytest.org/latest/getting-started.html just like >>>> this: >>>> >>>> abc@abc-VirtualBox:~$ sudo pip install -U pytest >>>> Downloading/unpacking pytest >>>> Running setup.py egg_info for package pytest >>>> >>>> Downloading/unpacking py>=1.4.29 (from pytest) >>>> Running setup.py egg_info for package py >>>> >>>> Installing collected packages: pytest, py >>>> Found existing installation: pytest 2.7.2 >>>> Uninstalling pytest: >>>> Successfully uninstalled pytest >>>> Running setup.py install for pytest >>>> >>>> Installing py.test script to /usr/local/bin >>>> Installing py.test-2.7 script to /usr/local/bin >>>> Found existing installation: py 1.4.30 >>>> Uninstalling py: >>>> Successfully uninstalled py >>>> Running setup.py install for py >>>> >>>> Successfully installed pytest py >>>> Cleaning up... >>>> >>>> then I tried to test wether pytest is installed correctly. >>>> >>>> abc@abc-VirtualBox:~$ py.test --version >>>> bash: /usr/bin/py.test: No such file or directory >>>> >>>> What should I do? Hoping for your reply. >>>> >>>> ------------------ ???????? ------------------ >>>> ??????: "??????";<[email protected]>; >>>> ????????: 2015??9??9??(??????) ????11:08 >>>> ??????: "??????"<[email protected]>; >>>> ????: ?????? ?????? How to update the newest NuPIC version >>>> >>>> I used "sudo pip install numpy --upgrage" and numpy 1.9.2 was installed >>>> successfully. >>>> Then I inputed commands: >>>> python setup.py build >>>> python setup.py install --user >>>> python setup.py develop --user >>>> The three commands showed above were all correct. >>>> Then I tried to test it. >>>> $NUPIC/bin/py_region_test >>>> --- ALL TESTS PASSED --- >>>> >>>> But all of the rest tests have the same error. >>>> abc@abc-VirtualBox:~$ $NUPIC/scripts/run_nupic_tests --all --coverage >>>> Traceback (most recent call last): >>>> File "/newdisk/nupic/scripts/run_nupic_tests", line 265, in <module> >>>> result = main(parser, sys.argv[1:]) >>>> File "/newdisk/nupic/scripts/run_nupic_tests", line 255, in main >>>> exitStatus = call(["py.test"] + args + list(tests)) >>>> File "/usr/lib/python2.7/subprocess.py", line 493, in call >>>> return Popen(*popenargs, **kwargs).wait() >>>> File "/usr/lib/python2.7/subprocess.py", line 679, in __init__ >>>> errread, errwrite) >>>> File "/usr/lib/python2.7/subprocess.py", line 1249, in _execute_child >>>> raise child_exception >>>> OSError: [Errno 2] No such file or directory >>>> >>>> my pytest version is 2.5.1. >>>> >>>> What should I do next? Thank you. >>>> >>>> >>>> ------------------ ???????? ------------------ >>>> ??????: "Matthew Taylor";<[email protected]>; >>>> ????????: 2015??9??8??(??????) ????11:02 >>>> ??????: "??????"<[email protected]>; >>>> ????: Re: ?????? How to update the newest NuPIC version >>>> >>>> See >>>> >>>> >>>> https://github.com/numenta/nupic/wiki/Build-and-Installation-FAQ#missing-pythonh-file >>>> >>>> Sent from my MegaPhone >>>> >>>> On Sep 8, 2015, at 5:14 AM, ?????? <[email protected]> wrote: >>>> >>>> I tried "git pull" and my local files are the newest. But the code can't >>>> run. So I input command "python setup.py install --user" and get an >>>> error >>>> as >>>> follows. >>>> ... >>>> File >>>> >>>> >>>> "/tmp/easy_install-C80eUH/numpy-1.9.2/numpy/distutils/command/build_src.py", >>>> line 329, in build_extension_sources >>>> File >>>> >>>> >>>> "/tmp/easy_install-C80eUH/numpy-1.9.2/numpy/distutils/command/build_src.py", >>>> line 386, in generate_sources >>>> File "numpy/core/setup.py", line 432, in generate_config_h >>>> >>>> File "numpy/core/setup.py", line 42, in check_types >>>> >>>> File "numpy/core/setup.py", line 293, in check_types >>>> >>>> SystemError: Cannot compile 'Python.h'. Perhaps you need to install >>>> python-dev|python-devel. >>>> >>>> then I tried: >>>> abc@abc-VirtualBox:/newdisk/nupic$ sudo apt-get install python-dev >>>> Reading package lists... Done >>>> Building dependency tree >>>> Reading state information... Done >>>> python-dev is already the newest version. >>>> 0 upgraded, 0 newly installed, 0 to remove and 195 not upgraded. >>>> >>>> But it still has the same error. >>>> >>>> My OS is ubuntu 12.04, and I just want to update it. Should I just >>>> follow >>>> the commands of "installation" part >>>> >>>> >>>> (https://github.com/numenta/nupic/wiki/Installing-and-Building-NuPIC#installation)? >>>> >>>> >>>> ------------------ ???????? ------------------ >>>> ??????: "Richard Crowder";<[email protected]>; >>>> ????????: 2015??9??8??(??????) ????5:39 >>>> ??????: "??????"<[email protected]>; >>>> ????: Re: How to update the newest NuPIC version >>>> >>>> Hi, >>>> >>>> The usual route is via 'pip install nupic' (local or system wide). In >>>> you >>>> case, grabbing source from GitHub, could you try a 'git pull' to sync >>>> with >>>> the main repository (and then follow the Readme and Wiki steps for >>>> building >>>> and install). >>>> >>>> Regards, Richard. >>>> >>>> >>>> On Tue, Sep 8, 2015 at 10:31 AM, ?????? <[email protected]> wrote: >>>>> >>>>> Hi NuPIC: >>>>> I installed the NuPIC environment several monthes ago. And I >>>>> wanted >>>>> to update to the newest version. But I'm not familiar with git command. >>>>> I >>>>> tried to use the commands as follows. >>>>> >>>>> abc@abc-VirtualBox:/newdisk/nupic>Git stash >>>>> abc@abc-VirtualBox:/newdisk/nupic>Git fetch origin >>>>> abc@abc-VirtualBox:/newdisk/nupic>Git diff master origin/master >>>>> abc@abc-VirtualBox:/newdisk/nupic>Git stash pop >>>>> >>>>> The file nupic/VERSION shows it is version 0.3.0.dev0, but I find some >>>>> files are still not same as the newest file in >>>>> https://github.com/numenta/nupic. >>>>> For example, the files in /nupic/examples/network are not the same. >>>>> >>>>> Maybe it's not your duty to answer this kind of questions. But I really >>>>> don't know who can help me to solve it. So hoping for your reply. Thank >>>>> you >>>>> so much. >>>>> >>>>> Yajingfu >>>> >>>> >>>
