I want to identify whether this is a test runner problem or a problem
with the NuPIC installation. Yajingfu, please try to run some of our
example code?
First, try our simplest example:
python examples/opf/clients/hotgym/simple/hotgym.py
This should output the following:
INFO:__main__:After 100 records, 1-step altMAPE=36.199232
INFO:__main__:After 200 records, 1-step altMAPE=26.795853
INFO:__main__:After 300 records, 1-step altMAPE=23.973930
INFO:__main__:After 400 records, 1-step altMAPE=22.752033
INFO:__main__:After 500 records, 1-step altMAPE=21.863996
INFO:__main__:After 600 records, 1-step altMAPE=21.944125
INFO:__main__:After 700 records, 1-step altMAPE=21.571184
INFO:__main__:After 800 records, 1-step altMAPE=21.877567
INFO:__main__:After 900 records, 1-step altMAPE=22.522499
INFO:__main__:After 1000 records, 1-step altMAPE=22.380281
Now, make sure you have MySQL running and then run this:
python examples/swarm/test_db.py
This will hopefully end with "Connection successful!!" Now a more
complex example:
cd examples/opf/clients/hotgym/prediction/one_gym/
python swarm.py
This will take several minutes to complete and dump a lot of output to
your screen before ending. Finally, run:
python run.py
Which will start and run the model the swarm found.
If any of these steps throw exceptions or fail in any way, there must
be a problem with the NuPIC installation on your system. If they all
run, I would make the assumption that something is off with your test
runner.
Thanks for your patience,
---------
Matt Taylor
OS Community Flag-Bearer
Numenta
On Thu, Sep 17, 2015 at 9:15 PM, 付亚静 <[email protected]> wrote:
> Hi
> Austin Marshall
>
> My result:
>
> abc@abc-VirtualBox:/newdisk/nupic$ py.test --verbose tests/unit
> ============================= test session starts
> ==============================
> platform linux2 -- Python 2.7.3 -- pytest-2.4.2 -- /usr/bin/python
> plugins: xdist, cov
> collecting 227 itemsSegmentation fault (core dumped)
>
>
> Yajingfu
>
>
> ------------------ 原始邮件 ------------------
> 发件人: "Austin Marshall";<[email protected]>;
> 发送时间: 2015年9月18日(星期五) 中午11:45
> 收件人: "付亚静"<[email protected]>;
> 主题: Re: 回复： 回复： How to update the newest NuPIC version
>
> I'm not aware of any specific env vars that would suppress py.test output.
> Maybe try running py.test directly from within the nupic source directory:
>
> py.test --verbose tests/unit
>
> Also, the following from earlier discussion is overkill:
>
> python setup.py build
> python setup.py install —user
> python setup.py develop —user
>
> You need only call python setup.py install --user OR python setup.py develop
> --user depending on your use-case, but either is sufficient for basic use.
> No need to do both, and the python setup.py build call is redundant, so you
> can skip that.
>
> On Sep 17, 2015 8:18 PM, "Matthew Taylor" <[email protected]> wrote:
>>
>> Yajingfu,
>>
>> Thank you very much for trying my instructions faithfully. I am truly
>> sorry they did not work.
>>
>> I don't understand why the test output is not showing in your console.
>> Maybe there is some VERBOSE environment variable that py.test is
>> picking up to turn the output off. I'm going to ask if Austin knows
>> anything about that. I'm wondering if this is some kind of test runner
>> problem.
>>
>> Regards,
>> ---------
>> Matt Taylor
>> OS Community Flag-Bearer
>> Numenta
>>
>>
>> On Thu, Sep 17, 2015 at 7:58 PM, 付亚静 <[email protected]> wrote:
>> > I'm sorry to tell you that the results still have problems.
>> > All of the contents of command "./scripts/run_nupic_tests -u" are showed
>> > as
>> > follows. (still have only several lines and the only difference is
>> > having no
>> > "3 errors")
>> > abc@abc-VirtualBox:/newdisk/nupic$ ./scripts/run_nupic_tests -u
>> > ============================= test session starts
>> > ==============================
>> > platform linux2 -- Python 2.7.3 -- pytest-2.4.2 -- /usr/bin/python
>> > plugins: xdist, cove
>> > collecting 227 items
>> >
>> > PS, my steps are showed as follows:
>> > cd $NUPIC
>> > git fetch origin
>> > git reset --hard origin/master
>> > git clean -dfx
>> >
>> > pip uninstall nupic -y
>> > pip uninstall nupic.bindings -y
>> >
>> > python setup.py build
>> > python setup.py install —user
>> > python setup.py develop —user
>> >
>> > ./scripts/run_nupic_tests -u
>> > ./scripts/run_nupic_tests -i
>> >
>> > Yajingfu
>> > ------------------ 原始邮件 ------------------
>> > 发件人: "Matthew Taylor";<[email protected]>;
>> > 发送时间: 2015年9月18日(星期五) 上午10:02
>> > 收件人: "付亚静"<[email protected]>;
>> > 主题: Re: 回复： 回复： How to update the newest NuPIC version
>> >
>> > I don't have any other ideas. The current release version is 0.3.1,
>> > which is higher than 0.3.1.dev0. In release 0.3.1, there is a new
>> > dependency for the latest version of nupic.bindings, which needed to
>> > be bumped to version 0.2.
>> >
>> > Please try to install once again from the latest source or from binary.
>> >
>> >
>> > Thanks,
>> > ---------
>> > Matt Taylor
>> > OS Community Flag-Bearer
>> > Numenta
>> >
>> >
>> > On Thu, Sep 17, 2015 at 6:34 PM, 付亚静 <[email protected]> wrote:
>> >> Hi
>> >> Matt Taylor
>> >> Are you sure I need to update the NuPIC version again? The
>> >> $NUPIC/VERSION
>> >> shows it is 0.3.1.dev0. In addition, no matter how many time I input
>> >> command "pip uninstall nupic.bindings -y", the result is I didn't
>> >> installed
>> >> it.
>> >>
>> >> abc@abc-VirtualBox:/newdisk$ pip uninstall nupic.bindings -y
>> >> Cannot uninstall requirement nupic.bindings, not installed
>> >> Storing complete log in /home/abc/.pip/pip.log
>> >>
>> >> Is it normal？
>> >>
>> >> Yajingfu
>> >> ------------------ 原始邮件 ------------------
>> >> 发件人: "Matthew Taylor";<[email protected]>;
>> >> 发送时间: 2015年9月18日(星期五) 上午7:43
>> >> 收件人: "付亚静"<[email protected]>;
>> >> 主题: Re: 回复： 回复： How to update the newest NuPIC version
>> >>
>> >> Yajingfu,
>> >>
>> >> I just sent this message:
>> >>
>> >>
>> >> http://lists.numenta.org/pipermail/nupic_lists.numenta.org/2015-September/011719.html
>> >>
>> >> Can you try re-installing following those instructions?
>> >> ---------
>> >> Matt Taylor
>> >> OS Community Flag-Bearer
>> >> Numenta
>> >>
>> >>
>> >> On Thu, Sep 17, 2015 at 4:25 PM, 付亚静 <[email protected]> wrote:
>> >>> Yes, it is all the output.
>> >>>
>> >>> Yajingfu
>> >>>
>> >>>
>> >>>
>> >>> ------------------ 原始邮件 ------------------
>> >>> 发件人: "Matthew Taylor";<[email protected]>;
>> >>> 发送时间: 2015年9月18日(星期五) 凌晨1:05
>> >>> 收件人: "付亚静"<[email protected]>;
>> >>> 主题: Re: 回复： 回复： How to update the newest NuPIC version
>> >>>
>> >>> Is this really all the output you get when you run?
>> >>>
>> >>>>>./scripts/run_nupic_tests -u
>> >>> ============================= test session starts
>> >>> ==============================
>> >>> platform linux2 -- Python 2.7.3 -- pytest-2.4.2 -- /usr/bin/python
>> >>> plugins: xdist, cov
>> >>> collecting 170 items / 3 errors
>> >>>
>> >>> When I run `./scripts/run_nupic_tests -u` there are hundreds of lines
>> >>> of test reports output.
>> >>>
>> >>> ---------
>> >>> Matt Taylor
>> >>> OS Community Flag-Bearer
>> >>> Numenta
>> >>>
>> >>>
>> >>> On Thu, Sep 17, 2015 at 5:24 AM, 付亚静 <[email protected]> wrote:
>> >>>>
>> >>>> Hi
>> >>>> Matt Taylor
>> >>>> I think the test result of "./scripts/run_nupic_tests -u" mentioned
>> >>>> in
>> >>>> previous email is incorrect. It shows "collecting 170 items / 3
>> >>>> errors".
>> >>>> And
>> >>>> I need to use the example in
>> >>>> $nupic/examples/network/hierarchy_network_demo.py which can run
>> >>>> correctly.
>> >>>> Do you have any advice? Thank you so much.
>> >>>>
>> >>>> Yajingfu
>> >>>>
>> >>>> ------------------ 原始邮件 ------------------
>> >>>> 发件人: "付亚静";<[email protected]>;
>> >>>> 发送时间: 2015年9月16日(星期三) 上午10:22
>> >>>> 收件人: "付亚静"<[email protected]>;
>> >>>> 主题: 回复： 回复： 回复： How to update the newest NuPIC version
>> >>>>
>> >>>> Hi
>> >>>>
>> >>>>>>./scripts/run_nupic_tests -u
>> >>>> ============================= test session starts
>> >>>> ==============================
>> >>>> platform linux2 -- Python 2.7.3 -- pytest-2.4.2 -- /usr/bin/python
>> >>>> plugins: xdist, cov
>> >>>> collecting 170 items / 3 errors
>> >>>>
>> >>>>>>./scripts/run_nupic_tests -i
>> >>>> 73 passed, 5 skipped in 264.26 seconds
>> >>>>
>> >>>> Yajingfu
>> >>>>
>> >>>> ------------------ 原始邮件 ------------------
>> >>>> 发件人: "Matthew Taylor";<[email protected]>;
>> >>>> 发送时间: 2015年9月15日(星期二) 晚上10:22
>> >>>> 收件人: "付亚静"<[email protected]>;
>> >>>> 主题: Re: 回复： 回复： How to update the newest NuPIC version
>> >>>>
>> >>>> Test it like this:
>> >>>>
>> >>>> Unit tests:
>> >>>> ./scripts/run_nupic_tests -u
>> >>>> Integration tests:
>> >>>> ./scripts/run_nupic_tests -i
>> >>>> ---------
>> >>>> Matt Taylor
>> >>>> OS Community Flag-Bearer
>> >>>> Numenta
>> >>>>
>> >>>>
>> >>>> On Mon, Sep 14, 2015 at 11:44 PM, 付亚静 <[email protected]> wrote:
>> >>>>> Hi
>> >>>>> Matt Taylor
>> >>>>> Thank you for your reply. I did just as what you said. The file
>> >>>>> setup.py
>> >>>>> has
>> >>>>> been complied correctly. Then I tested it. But there is no such
>> >>>>> directory
>> >>>>> of
>> >>>>> $NUPIC/bin
>> >>>>>
>> >>>>> abc@abc-VirtualBox:/newdisk$ $NUPIC/bin/py_region_test
>> >>>>> bash: /newdisk/nupic/bin/py_region_test: No such file or directory
>> >>>>>
>> >>>>> And I was intended to run
>> >>>>> $NUPIC/examples/network/hierachy-demo-output.py
>> >>>>> but failed.
>> >>>>>
>> >>>>> /usr/bin/python2.7
>> >>>>> /newdisk/nupic/examples/network/hierarchy_network_demo.py
>> >>>>> Creating network
>> >>>>> Running network
>> >>>>> Writing output to:
>> >>>>> /newdisk/nupic/examples/network/hierarchy-demo-output.csv
>> >>>>> Traceback (most recent call last):
>> >>>>> File "/newdisk/nupic/examples/network/hierarchy_network_demo.py",
>> >>>>> line
>> >>>>> 368, in <module>
>> >>>>> runDemo()
>> >>>>> File "/newdisk/nupic/examples/network/hierarchy_network_demo.py",
>> >>>>> line
>> >>>>> 362, in runDemo
>> >>>>> runNetwork(network, numRecords, writer)
>> >>>>> File "/newdisk/nupic/examples/network/hierarchy_network_demo.py",
>> >>>>> line
>> >>>>> 305, in runNetwork
>> >>>>> network.run(1)
>> >>>>> File "/newdisk/nupic/nupic/engine/__init__.py", line 666, in run
>> >>>>> engine.Network.run(self, n)
>> >>>>> File
>> >>>>>
>> >>>>>
>> >>>>>
>> >>>>>
>> >>>>>
>> >>>>> "/home/abc/.local/lib/python2.7/site-packages/nupic.bindings-0.1.5-py2.7-linux-x86_64.egg/nupic/bindings/engine_internal.py",
>> >>>>> line 1146, in run
>> >>>>> return _engine_internal.Network_run(self, *args, **kwargs)
>> >>>>> File "/newdisk/nupic/nupic/regions/CLAClassifierRegion.py", line
>> >>>>> 289,
>> >>>>> in
>> >>>>> compute
>> >>>>> categories = [category for category in inputs["categoryIn"]
>> >>>>> KeyError: 'categoryIn'
>> >>>>>
>> >>>>> Yajingfu
>> >>>>>
>> >>>>> ------------------ 原始邮件 ------------------
>> >>>>> 发件人: "Matthew Taylor";<[email protected]>;
>> >>>>> 发送时间: 2015年9月15日(星期二) 中午12:52
>> >>>>> 收件人: "付亚静"<[email protected]>;
>> >>>>> 主题: Re: 回复： 回复： How to update the newest NuPIC version
>> >>>>>
>> >>>>> Sorry, wrong command.
>> >>>>>
>> >>>>> git reset --hard origin/master
>> >>>>>
>> >>>>> Sent from my MegaPhone
>> >>>>>
>> >>>>> On Sep 14, 2015, at 8:58 PM, 付亚静 <[email protected]> wrote:
>> >>>>>
>> >>>>> Hi
>> >>>>> Matt Taylor
>> >>>>> That's very kind of you and thank you for your detailed explanation.
>> >>>>> But
>> >>>>> I
>> >>>>> can't hard reset.
>> >>>>>
>> >>>>> abc@abc-VirtualBox:/newdisk/nupic$ git reset --hard origin master
>> >>>>> fatal: Cannot do hard reset with paths.
>> >>>>>
>> >>>>> abc@abc-VirtualBox:/newdisk/nupic$ python --version
>> >>>>> Python 2.7.3
>> >>>>>
>> >>>>> abc@abc-VirtualBox:/newdisk/nupic$ pip --version
>> >>>>> pip 1.0 from /usr/lib/python2.7/dist-packages (python 2.7)
>> >>>>>
>> >>>>> abc@abc-VirtualBox:/newdisk/nupic$ gcc --version
>> >>>>> gcc (Ubuntu 4.8.1-2ubuntu1~12.04) 4.8.1
>> >>>>> Copyright (C) 2013 Free Software Foundation, Inc.
>> >>>>> This is free software; see the source for copying conditions. There
>> >>>>> is
>> >>>>> NO
>> >>>>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
>> >>>>> PURPOSE.
>> >>>>>
>> >>>>> abc@abc-VirtualBox:/newdisk/nupic$ cat /etc/issue
>> >>>>> Ubuntu 12.04.5 LTS \n \l
>> >>>>>
>> >>>>> I'm confused with so many git commands and not sure what's the
>> >>>>> meaning
>> >>>>> of
>> >>>>> "checked out" in "assuming $NUPIC is where you have it checked out".
>> >>>>> Some
>> >>>>> info about my nupic are showed as follows:
>> >>>>>
>> >>>>> abc@abc-VirtualBox:/newdisk/nupic$ git branch -a
>> >>>>> * master
>> >>>>> remotes/origin/HEAD -> origin/master
>> >>>>> remotes/origin/add-nupic-linux64-back
>> >>>>> remotes/origin/add_capnp_to_SPRegion
>> >>>>>
>> >>>>> remotes/origin/core-update-09190c1b465a0ef5268cfb40ea03194fd1ee06a5
>> >>>>>
>> >>>>> remotes/origin/core-update-09f8350ef49aa2404a3aaab32200d99793fb17c4
>> >>>>>
>> >>>>> remotes/origin/core-update-0a891f27d137825e1d29870cb2a2df7ac33f5b65
>> >>>>>
>> >>>>> remotes/origin/core-update-0c815c2b84d92d0ca1a81beca2bed7e3d3ce6776
>> >>>>>
>> >>>>> remotes/origin/core-update-0d5eb8452229a42352e77c69f4300165c3d6f834
>> >>>>>
>> >>>>> remotes/origin/core-update-140a176ef1f53bb5014e60cec5a26ecc0498d23e
>> >>>>>
>> >>>>> remotes/origin/core-update-241986490135472f5b2a33fc54de41ff3fc90871
>> >>>>>
>> >>>>> remotes/origin/core-update-26f27da204948ad6858a722627acf700722de195
>> >>>>>
>> >>>>> remotes/origin/core-update-3b6eeb2af09b8e1f4def918c98b013fe49acea46
>> >>>>>
>> >>>>> remotes/origin/core-update-3ee66ab918b3673e347f6cd38d92f3498c0a835e
>> >>>>>
>> >>>>> remotes/origin/core-update-412871e85dec5a195f7f59c01ca87100bfd5f346
>> >>>>>
>> >>>>> remotes/origin/core-update-42d66a13dffc2647ea852ed4d2632f751b66ecf4
>> >>>>>
>> >>>>> remotes/origin/core-update-4ef1f6e560af555f1f53f457d0400dc4c3a67658
>> >>>>>
>> >>>>> remotes/origin/core-update-504f3616c52d3809bc056da1726aefc4d1cdacb7
>> >>>>>
>> >>>>> remotes/origin/core-update-54faae374b409b8874feeeec40b2644eec6cddc1
>> >>>>>
>> >>>>> remotes/origin/core-update-603ee4b04b3c2b8d444b0b98aef7ff1cfaa4d6c6
>> >>>>>
>> >>>>> remotes/origin/core-update-60a82001f0f8a6ed2a8097571653bfe0f1976683
>> >>>>>
>> >>>>> remotes/origin/core-update-633368e394c3de72e93e401efcd8e91ec30abf53
>> >>>>>
>> >>>>> remotes/origin/core-update-6485cd327fbdcf3bb6d15260468ff5e1da5f9753
>> >>>>>
>> >>>>> remotes/origin/core-update-66de57d6294575ad36343a8ab8d1e0697e1789dc
>> >>>>>
>> >>>>> remotes/origin/core-update-6729b0a634b3fa74b76fd7065ea0c426b33a0808
>> >>>>>
>> >>>>> remotes/origin/core-update-69af1b6750198c7b37d974b161bdd0c425fc0a2c
>> >>>>>
>> >>>>> remotes/origin/core-update-6d83da85e1375cb0bc961dc79e95b3269f6ff4ae
>> >>>>>
>> >>>>> remotes/origin/core-update-701eb9a1b57f7da33a3a84f800982915a628c6af
>> >>>>>
>> >>>>> remotes/origin/core-update-706b5682b35e0f78ce1a36c0e7100d109b04ed54
>> >>>>>
>> >>>>> remotes/origin/core-update-72da8988209e95845bead91b7a91e1312939dd78
>> >>>>>
>> >>>>> remotes/origin/core-update-7618a54a7f0e7530da5d1f5e4e5a053675d6ad5c
>> >>>>>
>> >>>>> remotes/origin/core-update-78fb04c13f6255cc491a28ac296b9b50c252913a
>> >>>>>
>> >>>>> remotes/origin/core-update-7b51f6c24659b732584b51bc61e85ff34eef4d53
>> >>>>>
>> >>>>> remotes/origin/core-update-7b9742fa4494dde6a716da0a84fcf791dbcab2b7
>> >>>>>
>> >>>>> remotes/origin/core-update-82b9a97937b17d9a2c32e9d89bca6e1fe1eea923
>> >>>>>
>> >>>>> remotes/origin/core-update-908600dc1e8f35a2a5c848e0af2e708948886aeb
>> >>>>>
>> >>>>> remotes/origin/core-update-917f48c0de7c47359c92487db7c4967020140a45
>> >>>>>
>> >>>>> remotes/origin/core-update-9218471fcdba9ea87b7f372d92d217d9553817a7
>> >>>>>
>> >>>>> remotes/origin/core-update-a13e5de360287a8c4b63675ca170b9d4556eaedf
>> >>>>>
>> >>>>> remotes/origin/core-update-a23a6df1aff8e475ec6995d8b6f48cae83e8dbb4
>> >>>>>
>> >>>>> remotes/origin/core-update-a25068f00bde589f029e0cfc94ac3343bfaa9254
>> >>>>>
>> >>>>> remotes/origin/core-update-a5b35e6619dbfe1130dc4785bf92d7df3fba6cb5
>> >>>>>
>> >>>>> remotes/origin/core-update-ad25c77d3e30f1029816aabf17ea4d387fff3ea3
>> >>>>>
>> >>>>> remotes/origin/core-update-b4bdca9627857a5076f7e40f46cba1efa3284872
>> >>>>>
>> >>>>> remotes/origin/core-update-b70bfd70f9fd7176c160a775533e3b0523d1db7e
>> >>>>>
>> >>>>> remotes/origin/core-update-b71a593077f5e49c780b0002629b5e8966f61b36
>> >>>>>
>> >>>>> remotes/origin/core-update-bc25849db6815d379afb5b539e27c8565e6417f0
>> >>>>>
>> >>>>> remotes/origin/core-update-c6f634cabfba545545faa0ef901a566f7a7fd70e
>> >>>>>
>> >>>>> remotes/origin/core-update-cb55ebd9633923040176db0c041945f190d69800
>> >>>>>
>> >>>>> remotes/origin/core-update-cca41015071df968ba79ab7b9625f68de2cd4e1d
>> >>>>>
>> >>>>> remotes/origin/core-update-d41566a1b1448dcdd3b1a846ce14d18b63be2f18
>> >>>>>
>> >>>>> remotes/origin/core-update-da34067f70ffcd71aa56781fe0e4aa1ced81ff79
>> >>>>>
>> >>>>> remotes/origin/core-update-de7052fa535cb55ba97d6dd37950d9aab998b35c
>> >>>>>
>> >>>>> remotes/origin/core-update-eb0b420973f54536debd9d13334a88cdc05bf5c1
>> >>>>>
>> >>>>> remotes/origin/core-update-f413775712bed847fb94e2abb9c20c546fb4d44c
>> >>>>>
>> >>>>> remotes/origin/core-update-f55119a2f255fa4961b9c44ecb5261076bb4db0a
>> >>>>>
>> >>>>> remotes/origin/core-update-fd7757d57fe4ba873156963f961567a5a6f42f43
>> >>>>>
>> >>>>> remotes/origin/core-update-ffb81006c38ac9c1bdd2c161c91211d556ec1805
>> >>>>> remotes/origin/master
>> >>>>> remotes/origin/revert-1482-scalar-space-encoder
>> >>>>>
>> >>>>>
>> >>>>> abc@abc-VirtualBox:/newdisk/nupic$ git status
>> >>>>> # On branch master
>> >>>>> # Your branch is ahead of 'origin/master' by 2 commits.
>> >>>>> #
>> >>>>> # Untracked files:
>> >>>>> # (use "git add <file>..." to include in what will be committed)
>> >>>>> #
>> >>>>> # bin/
>> >>>>> # examples/AD_fyj/
>> >>>>> # examples/fyj/
>> >>>>> # examples/network/hierarchy-demo-output.csv
>> >>>>> # examples/network/network-demo-output.csv
>> >>>>> # examples/network/test_output.csv
>> >>>>> # examples/opf/clients/hotgym/anomaly/anomaly_scores.csv
>> >>>>> #
>> >>>>> examples/opf/clients/hotgym/anomaly/one_gym/rec-center-hourly_out.csv
>> >>>>> #
>> >>>>>
>> >>>>>
>> >>>>>
>> >>>>>
>> >>>>>
>> >>>>> examples/opf/clients/hotgym/prediction/one_gym/model_params/rec_center_hourly_model_params.py
>> >>>>> # examples/opf/clients/hotgym/prediction/one_gym/swarm/
>> >>>>> # fake-extension.so
>> >>>>> # nupic/bindings/_algorithms.so
>> >>>>> # nupic/bindings/_engine_internal.so
>> >>>>> # nupic/bindings/_math.so
>> >>>>> # nupic/bindings/algorithms.py
>> >>>>> # nupic/bindings/algorithms_wrap.cxx
>> >>>>> # nupic/bindings/engine_internal.py
>> >>>>> # nupic/bindings/engine_internal_wrap.cxx
>> >>>>> # nupic/bindings/math.py
>> >>>>> # nupic/bindings/math_wrap.cxx
>> >>>>> # nupic/bindings/proto/BitHistory.capnp
>> >>>>> # nupic/bindings/proto/ClaClassifier.capnp
>> >>>>> # nupic/bindings/proto/ConnectionsProto.capnp
>> >>>>> # nupic/bindings/proto/RandomProto.capnp
>> >>>>> # nupic/bindings/proto/SparseBinaryMatrixProto.capnp
>> >>>>> # nupic/bindings/proto/SparseMatrixProto.capnp
>> >>>>> # nupic/bindings/proto/SpatialPoolerProto.capnp
>> >>>>> # nupic/libcpp_region.so
>> >>>>> nothing added to commit but untracked files present (use "git add"
>> >>>>> to
>> >>>>> track)
>> >>>>>
>> >>>>> Yajingfu
>> >>>>> ------------------ 原始邮件 ------------------
>> >>>>> 发件人: "Matthew Taylor";<[email protected]>;
>> >>>>> 发送时间: 2015年9月15日(星期二) 凌晨0:57
>> >>>>> 收件人: "付亚静"<[email protected]>;
>> >>>>> 主题: Re: 回复： How to update the newest NuPIC version
>> >>>>>
>> >>>>> Yajingfu,
>> >>>>>
>> >>>>> Try this, so we can start from scratch. These git commands will
>> >>>>> ensure
>> >>>>> that your working directory is up to date and clean (this will
>> >>>>> destroy
>> >>>>> any local changes you have not committed):
>> >>>>>
>> >>>>> cd $NUPIC # assuming $NUPIC is where you have it checked out
>> >>>>> git fetch origin
>> >>>>> git reset --hard origin master
>> >>>>> git clean -dfx
>> >>>>>
>> >>>>> Now again make sure everything is uninstalled:
>> >>>>>
>> >>>>> pip uninstall nupic -y
>> >>>>> pip uninstall nupic.bindings -y
>> >>>>>
>> >>>>> Run those two commands a few times until they tell you nothing is
>> >>>>> installed. Then try to install from scratch:
>> >>>>>
>> >>>>> python setup.py install
>> >>>>>
>> >>>>> You may need to add the "--user" option for the command above if you
>> >>>>> have permission issues.
>> >>>>>
>> >>>>> If this does not work, please tell us some extra info:
>> >>>>> - python version
>> >>>>> - pip version
>> >>>>> - OS details (Linux flavor?)
>> >>>>> - gcc version
>> >>>>>
>> >>>>> I hope that helps,
>> >>>>>
>> >>>>>
>> >>>>>
>> >>>>> ---------
>> >>>>> Matt Taylor
>> >>>>> OS Community Flag-Bearer
>> >>>>> Numenta
>> >>>>>
>> >>>>>
>> >>>>> On Sun, Sep 13, 2015 at 7:19 PM, 付亚静 <[email protected]> wrote:
>> >>>>>> Hi NuPIC
>> >>>>>> I wonder what else I can do for the problem. Can anyone help
>> >>>>>> me?
>> >>>>>> Thank
>> >>>>>> you so much！
>> >>>>>>
>> >>>>>> Yajingfu
>> >>>>>>
>> >>>>>>
>> >>>>>> ------------------ 原始邮件 ------------------
>> >>>>>> 发件人: "付亚静";<[email protected]>;
>> >>>>>> 发送时间: 2015年9月11日(星期五) 晚上11:16
>> >>>>>> 收件人: "付亚静"<[email protected]>;
>> >>>>>> 主题: 回复： 回复： How to update the newest NuPIC version
>> >>>>>>
>> >>>>>> Hi
>> >>>>>>
>> >>>>>> I tried the two commands and had some version conflict. For
>> >>>>>> example，VersionConflict: (pytest 2.7.2
>> >>>>>> (/usr/local/lib/python2.7/dist-packages),
>> >>>>>> Requirement.parse('pytest==2.4.2'))。
>> >>>>>>
>> >>>>>> so I reinstalled them and it shows like this:
>> >>>>>>
>> >>>>>> abc@abc-VirtualBox:/newdisk$ pip uninstall nupic -y
>> >>>>>> Uninstalling nupic:
>> >>>>>> Successfully uninstalled nupic
>> >>>>>> abc@abc-VirtualBox:/newdisk$ pip uninstall nupic.bindings -y
>> >>>>>> Cannot uninstall requirement nupic.bindings, not installed
>> >>>>>> Storing complete log in /home/abc/.pip/pip.log
>> >>>>>>
>> >>>>>> but it still has the same problem:
>> >>>>>>
>> >>>>>> abc@abc-VirtualBox:/newdisk/nupic$ python setup.py build
>> >>>>>> error in nupic setup command: 'install_requires' must be a string
>> >>>>>> or
>> >>>>>> list
>> >>>>>> of
>> >>>>>> strings containing valid project/version requirement specifiers
>> >>>>>>
>> >>>>>> What should I do next?
>> >>>>>>
>> >>>>>> ------------------ 原始邮件 ------------------
>> >>>>>> 发件人: "Matthew Taylor";<[email protected]>;
>> >>>>>> 发送时间: 2015年9月11日(星期五) 晚上10:33
>> >>>>>> 收件人: "付亚静"<[email protected]>;
>> >>>>>> 主题: Re: 回复： How to update the newest NuPIC version
>> >>>>>>
>> >>>>>> Try uninstalling any old versions of nupic:
>> >>>>>>
>> >>>>>>
>> >>>>>>
>> >>>>>>
>> >>>>>>
>> >>>>>>
>> >>>>>> https://github.com/numenta/nupic/wiki/Build-and-Installation-FAQ#im-having-trouble-updating-to-a-newer-version-of-nupic
>> >>>>>>
>> >>>>>> Then run "python setup.py build" again?
>> >>>>>> ---------
>> >>>>>> Matt Taylor
>> >>>>>> OS Community Flag-Bearer
>> >>>>>> Numenta
>> >>>>>>
>> >>>>>>
>> >>>>>> On Fri, Sep 11, 2015 at 2:38 AM, 付亚静 <[email protected]> wrote:
>> >>>>>>>
>> >>>>>>> HI
>> >>>>>>>
>> >>>>>>> I took a snapshot before. So I recovered it and installed numpy
>> >>>>>>> 1.9.2
>> >>>>>>> and
>> >>>>>>> py.test at first successfully. Then I pulled and get the newest
>> >>>>>>> version.
>> >>>>>>> But it can't be build seccufully.
>> >>>>>>>
>> >>>>>>> My steps are as follows.
>> >>>>>>>
>> >>>>>>>>>git commit -a
>> >>>>>>>>>git pull
>> >>>>>>> remote: Counting objects: 4, done.
>> >>>>>>> remote: Compressing objects: 100% (4/4), done.
>> >>>>>>> remote: Total 4 (delta 0), reused 0 (delta 0), pack-reused 0
>> >>>>>>> Unpacking objects: 100% (4/4), done.
>> >>>>>>> From https://github.com/numenta/nupic
>> >>>>>>> f2f1824..e6362c7 master -> origin/master
>> >>>>>>> * [new branch]
>> >>>>>>> core-update-4ef1f6e560af555f1f53f457d0400dc4c3a67658
>> >>>>>>> ->
>> >>>>>>> origin/core-update-4ef1f6e560af555f1f53f457d0400dc4c3a67658
>> >>>>>>> Merge made by the 'recursive' strategy.
>> >>>>>>> .nupic_modules | 2 +-
>> >>>>>>> 1 file changed, 1 insertion(+), 1 deletion(-)
>> >>>>>>>
>> >>>>>>>>>python setup.py build
>> >>>>>>> error in nupic setup command: 'install_requires' must be a string
>> >>>>>>> or
>> >>>>>>> list
>> >>>>>>> of
>> >>>>>>> strings containing valid project/version requirement specifiers
>> >>>>>>>
>> >>>>>>> It's too strange. I can't solve it. So asking for help. Thank you.
>> >>>>>>> :)
>> >>>>>>>
>> >>>>>>> ------------------ 原始邮件 ------------------
>> >>>>>>> 发件人: "Matthew Taylor";<[email protected]>;
>> >>>>>>> 发送时间: 2015年9月10日(星期四) 晚上11:43
>> >>>>>>> 收件人: "付亚静"<[email protected]>;
>> >>>>>>> 主题: Re: 回复： How to update the newest NuPIC version
>> >>>>>>>
>> >>>>>>> What does this show?
>> >>>>>>>
>> >>>>>>>> which pytest
>> >>>>>>>
>> >>>>>>>
>> >>>>>>> ---------
>> >>>>>>> Matt Taylor
>> >>>>>>> OS Community Flag-Bearer
>> >>>>>>> Numenta
>> >>>>>>>
>> >>>>>>> On Tue, Sep 8, 2015 at 9:24 PM, 付亚静 <[email protected]> wrote:
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>> I searched and found https://github.com/numenta/nupic/issues/2008
>> >>>>>>>> was
>> >>>>>>>> similar to my problem. So I input command "sudo pip install -U
>> >>>>>>>> pytest"
>> >>>>>>>> depending on http://pytest.org/latest/getting-started.html just
>> >>>>>>>> like
>> >>>>>>>> this:
>> >>>>>>>>
>> >>>>>>>> abc@abc-VirtualBox:~$ sudo pip install -U pytest
>> >>>>>>>> Downloading/unpacking pytest
>> >>>>>>>> Running setup.py egg_info for package pytest
>> >>>>>>>>
>> >>>>>>>> Downloading/unpacking py>=1.4.29 (from pytest)
>> >>>>>>>> Running setup.py egg_info for package py
>> >>>>>>>>
>> >>>>>>>> Installing collected packages: pytest, py
>> >>>>>>>> Found existing installation: pytest 2.7.2
>> >>>>>>>> Uninstalling pytest:
>> >>>>>>>> Successfully uninstalled pytest
>> >>>>>>>> Running setup.py install for pytest
>> >>>>>>>>
>> >>>>>>>> Installing py.test script to /usr/local/bin
>> >>>>>>>> Installing py.test-2.7 script to /usr/local/bin
>> >>>>>>>> Found existing installation: py 1.4.30
>> >>>>>>>> Uninstalling py:
>> >>>>>>>> Successfully uninstalled py
>> >>>>>>>> Running setup.py install for py
>> >>>>>>>>
>> >>>>>>>> Successfully installed pytest py
>> >>>>>>>> Cleaning up...
>> >>>>>>>>
>> >>>>>>>> then I tried to test wether pytest is installed correctly.
>> >>>>>>>>
>> >>>>>>>> abc@abc-VirtualBox:~$ py.test --version
>> >>>>>>>> bash: /usr/bin/py.test: No such file or directory
>> >>>>>>>>
>> >>>>>>>> What should I do? Hoping for your reply.
>> >>>>>>>>
>> >>>>>>>> ------------------ 原始邮件 ------------------
>> >>>>>>>> 发件人: "付亚静";<[email protected]>;
>> >>>>>>>> 发送时间: 2015年9月9日(星期三) 中午11:08
>> >>>>>>>> 收件人: "付亚静"<[email protected]>;
>> >>>>>>>> 主题: 回复： 回复： How to update the newest NuPIC version
>> >>>>>>>>
>> >>>>>>>> I used "sudo pip install numpy --upgrage" and numpy 1.9.2 was
>> >>>>>>>> installed
>> >>>>>>>> successfully.
>> >>>>>>>> Then I inputed commands:
>> >>>>>>>> python setup.py build
>> >>>>>>>> python setup.py install --user
>> >>>>>>>> python setup.py develop --user
>> >>>>>>>> The three commands showed above were all correct.
>> >>>>>>>> Then I tried to test it.
>> >>>>>>>> $NUPIC/bin/py_region_test
>> >>>>>>>> --- ALL TESTS PASSED ---
>> >>>>>>>>
>> >>>>>>>> But all of the rest tests have the same error.
>> >>>>>>>> abc@abc-VirtualBox:~$ $NUPIC/scripts/run_nupic_tests --all
>> >>>>>>>> --coverage
>> >>>>>>>> Traceback (most recent call last):
>> >>>>>>>> File "/newdisk/nupic/scripts/run_nupic_tests", line 265, in
>> >>>>>>>> <module>
>> >>>>>>>> result = main(parser, sys.argv[1:])
>> >>>>>>>> File "/newdisk/nupic/scripts/run_nupic_tests", line 255, in
>> >>>>>>>> main
>> >>>>>>>> exitStatus = call(["py.test"] + args + list(tests))
>> >>>>>>>> File "/usr/lib/python2.7/subprocess.py", line 493, in call
>> >>>>>>>> return Popen(*popenargs, **kwargs).wait()
>> >>>>>>>> File "/usr/lib/python2.7/subprocess.py", line 679, in __init__
>> >>>>>>>> errread, errwrite)
>> >>>>>>>> File "/usr/lib/python2.7/subprocess.py", line 1249, in
>> >>>>>>>> _execute_child
>> >>>>>>>> raise child_exception
>> >>>>>>>> OSError: [Errno 2] No such file or directory
>> >>>>>>>>
>> >>>>>>>> my pytest version is 2.5.1.
>> >>>>>>>>
>> >>>>>>>> What should I do next? Thank you.
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>> ------------------ 原始邮件 ------------------
>> >>>>>>>> 发件人: "Matthew Taylor";<[email protected]>;
>> >>>>>>>> 发送时间: 2015年9月8日(星期二) 晚上11:02
>> >>>>>>>> 收件人: "付亚静"<[email protected]>;
>> >>>>>>>> 主题: Re: 回复： How to update the newest NuPIC version
>> >>>>>>>>
>> >>>>>>>> See
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>> https://github.com/numenta/nupic/wiki/Build-and-Installation-FAQ#missing-pythonh-file
>> >>>>>>>>
>> >>>>>>>> Sent from my MegaPhone
>> >>>>>>>>
>> >>>>>>>> On Sep 8, 2015, at 5:14 AM, 付亚静 <[email protected]> wrote:
>> >>>>>>>>
>> >>>>>>>> I tried "git pull" and my local files are the newest. But the
>> >>>>>>>> code
>> >>>>>>>> can't
>> >>>>>>>> run. So I input command "python setup.py install --user" and get
>> >>>>>>>> an
>> >>>>>>>> error
>> >>>>>>>> as
>> >>>>>>>> follows.
>> >>>>>>>> ...
>> >>>>>>>> File
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>> "/tmp/easy_install-C80eUH/numpy-1.9.2/numpy/distutils/command/build_src.py",
>> >>>>>>>> line 329, in build_extension_sources
>> >>>>>>>> File
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>> "/tmp/easy_install-C80eUH/numpy-1.9.2/numpy/distutils/command/build_src.py",
>> >>>>>>>> line 386, in generate_sources
>> >>>>>>>> File "numpy/core/setup.py", line 432, in generate_config_h
>> >>>>>>>>
>> >>>>>>>> File "numpy/core/setup.py", line 42, in check_types
>> >>>>>>>>
>> >>>>>>>> File "numpy/core/setup.py", line 293, in check_types
>> >>>>>>>>
>> >>>>>>>> SystemError: Cannot compile 'Python.h'. Perhaps you need to
>> >>>>>>>> install
>> >>>>>>>> python-dev|python-devel.
>> >>>>>>>>
>> >>>>>>>> then I tried:
>> >>>>>>>> abc@abc-VirtualBox:/newdisk/nupic$ sudo apt-get install
>> >>>>>>>> python-dev
>> >>>>>>>> Reading package lists... Done
>> >>>>>>>> Building dependency tree
>> >>>>>>>> Reading state information... Done
>> >>>>>>>> python-dev is already the newest version.
>> >>>>>>>> 0 upgraded, 0 newly installed, 0 to remove and 195 not upgraded.
>> >>>>>>>>
>> >>>>>>>> But it still has the same error.
>> >>>>>>>>
>> >>>>>>>> My OS is ubuntu 12.04, and I just want to update it. Should I
>> >>>>>>>> just
>> >>>>>>>> follow
>> >>>>>>>> the commands of "installation" part
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>> (https://github.com/numenta/nupic/wiki/Installing-and-Building-NuPIC#installation)?
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>> ------------------ 原始邮件 ------------------
>> >>>>>>>> 发件人: "Richard Crowder";<[email protected]>;
>> >>>>>>>> 发送时间: 2015年9月8日(星期二) 下午5:39
>> >>>>>>>> 收件人: "付亚静"<[email protected]>;
>> >>>>>>>> 主题: Re: How to update the newest NuPIC version
>> >>>>>>>>
>> >>>>>>>> Hi,
>> >>>>>>>>
>> >>>>>>>> The usual route is via 'pip install nupic' (local or system
>> >>>>>>>> wide).
>> >>>>>>>> In
>> >>>>>>>> you
>> >>>>>>>> case, grabbing source from GitHub, could you try a 'git pull' to
>> >>>>>>>> sync
>> >>>>>>>> with
>> >>>>>>>> the main repository (and then follow the Readme and Wiki steps
>> >>>>>>>> for
>> >>>>>>>> building
>> >>>>>>>> and install).
>> >>>>>>>>
>> >>>>>>>> Regards, Richard.
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>> On Tue, Sep 8, 2015 at 10:31 AM, 付亚静 <[email protected]> wrote:
>> >>>>>>>>>
>> >>>>>>>>> Hi NuPIC:
>> >>>>>>>>> I installed the NuPIC environment several monthes ago. And
>> >>>>>>>>> I
>> >>>>>>>>> wanted
>> >>>>>>>>> to update to the newest version. But I'm not familiar with git
>> >>>>>>>>> command.
>> >>>>>>>>> I
>> >>>>>>>>> tried to use the commands as follows.
>> >>>>>>>>>
>> >>>>>>>>> abc@abc-VirtualBox:/newdisk/nupic>Git stash
>> >>>>>>>>> abc@abc-VirtualBox:/newdisk/nupic>Git fetch origin
>> >>>>>>>>> abc@abc-VirtualBox:/newdisk/nupic>Git diff master origin/master
>> >>>>>>>>> abc@abc-VirtualBox:/newdisk/nupic>Git stash pop
>> >>>>>>>>>
>> >>>>>>>>> The file nupic/VERSION shows it is version 0.3.0.dev0, but I
>> >>>>>>>>> find
>> >>>>>>>>> some
>> >>>>>>>>> files are still not same as the newest file in
>> >>>>>>>>> https://github.com/numenta/nupic.
>> >>>>>>>>> For example, the files in /nupic/examples/network are not the
>> >>>>>>>>> same.
>> >>>>>>>>>
>> >>>>>>>>> Maybe it's not your duty to answer this kind of questions. But I
>> >>>>>>>>> really
>> >>>>>>>>> don't know who can help me to solve it. So hoping for your
>> >>>>>>>>> reply.
>> >>>>>>>>> Thank
>> >>>>>>>>> you
>> >>>>>>>>> so much.
>> >>>>>>>>>
>> >>>>>>>>> Yajingfu
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>
>>
>
