O , 2012-05-29 09:24 -0700, Craig James rakstīja:
> On Mon, May 28, 2012 at 3:08 AM, Noel O'Boyle <baoille...@gmail.com> wrote:
>
> > > Now I've checked the tautomer tests, and it also fails with the "stock"
> > > r4758, i.e. before I changed smilesformat.cpp.
> > >
> > > $ bin/test_tautomer
> > >
> > > /home/cjames/openbabel-2.3.x-r4758/source/test/tautomertest.cpp:76:
> > > canonicalTautomers.size() == 1 [13 == 1] (FAIL)
> >
> > I think there's something wrong with your setup because if you go back
> > in time on the dashboard you can see that the tests passed until last
> > week. I typically run the tests with "ctest -R taut* -VV", which sets
> > some environment variables and then runs the test from the correct
> > directory with verbose output.
> >
>
> Hmmm ... something isn't adding up. I double-checked that I have an
> unaltered OpenBabel source tree at revision 4758.
>
> $ svn diff -r4758
> $
>
> I.e. it's a completely stock version of OpenBabel 2.3.x. I'm using Ubuntu
> 10.04 ("stable") release, fully updated. I don't have any environment
> variables set that would affect OpenBabel. After "make install", I ran
> "ctest -R '.*' -VV" and got lots of segfaults (see summary below).
Hi!
It is probably your setup. I just did a bisect on this issue and it
points to r4763, before that all tests pass:
b33e496e2280af0d20f1e227aca2fa112e929546 is the first bad commit
commit b33e496e2280af0d20f1e227aca2fa112e929546
Author: cjames53 <cjames53@71e0b675-c112-0410-beda-96664073b5c2>
Date: Thu May 24 15:07:27 2012 +0000
Removed a full-molecule-copy operation that was (apparently) added
by accident. It caused the molecule to be copied, and forced
aromaticity to be recomputed, each time a SMILES was created.
git-svn-id:
https://openbabel.svn.sourceforge.net/svnroot/openbabel/openbabel/trunk@4763
Did you run make clean before rebuilding?
Reinis
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