> the -m option works good, but is there anypossibility to make the filename
> the molecule name?

IIRC, the answer is still "no, but it's fairly easy to do"

http://sourceforge.net/mailarchive/forum.php?thread_name=BANLkTimwxP%3DkUsu%3DDDn9yr6j2UShL852ig%40mail.gmail.com&forum_name=openbabel-discuss

Hope that helps,
-Geoff
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