If I understand correctly, then something like...

import pybel
for i in range(1,100):
  inputfile = "output%d.mol2" % i
  mol = pybel.readfile("mol2", inputfile).next()
  mol.write("mol2", mol.title + ".mol2", overwrite=True)

On 4 January 2012 12:27, Cyberbroker1 <rene.buett...@rwth-aachen.de> wrote:
> great, thank you again^^
>
> But there is still one problem left.
>
> import pybel
> for mol in pybel.readfile("mol2", "-output1.mol2"): # I will have plenty of
> "outputX.mol2" files
>        filename = mol.OBMol.GetTitle()
>        filename = filename + ".mol2"
>        output = open(filename,"w") # erase existing file, if any
>        output.write(mol.write("mol2"))
>        output.close()
>
> I know that it will be done with some kind of loop, but i have no idea how
> to programm it.
>
> Best
>
> Cy
>
> --
> View this message in context: 
> http://forums.openbabel.org/one-input-file-multiple-output-files-tp4254723p4261039.html
> Sent from the General discussion mailing list archive at Nabble.com.
>
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