You have confused CMake by using the same value for CMAKE_INSTALL_PREFIX as your build directory. Instead try -DCMAKE_INSTALL_PREFIX=<path>/openbabel-2.3.1/install. Ditto for the PYTHON_PREFIX. Actually, if I were you I would go with the default, -DPYTHON_PREFIX=
By the way, you should probably use OB 2.3.2 instead of OB 2.3.1. - Noel On 21 December 2012 09:41, Charlotta Schärfe <schae...@informatik.uni-tuebingen.de> wrote: > Hi everyone, > > I'm not quite sure if this is the correct place to ask my question, but I > couldn't find any help on google - so here I am! > > On most of my systems openbabel works perfectly fine (compiled by myself and > taken from yum/apt-get). > However, I am now trying to install the python bindings for OpenBabel 2.3.1 > on a CentOS5 system. Unfortunately the bindings I could get from yum are > only for an older version so I wanted to compile everything by myself. > Until I reach make install everything looks good, but then I get an error I > never encountered before. > > So here is what works: > mkdir build > cd build > cmake .. -DPYTHON_BINDINGS=ON -DPYTHON_PREFIX=<path>/openbabel-2.3.1/build > -DCMAKE_INSTALL_PREFIX=<path>/openbabel-2.3.1/build -DRUN_SWIG=ON > -DSWIG_EXECUTABLE=/<path>/swig-2.0.9/build/swig > --- then edit the CMakeCache to have proper path to eigen2, > -DEIGEN2_INCLUDE_DIR doesn't really work, somehow) > make -j4 > > where <path> is the path to my homedirectory. > > I then get my folders with the following libraries (among others) in the > <path>/openbabel-2.3.1/build/lib/ dir: > libinchi.so -> libinchi.so.0 > libinchi.so.0 -> libinchi.so.0.3.1 > libinchi.so.0.3.1 > libopenbabel.so -> libopenbabel.so.4 > libopenbabel.so.4 -> libopenbabel.so.4.0.1 > libopenbabel.so.4.0.1 > > If I then do 'make install', I get the following errors: > CMake Error at src/cmake_install.cmake:48 (FILE): > file INSTALL cannot find > "<path>/openbabel-2.3.1/build/lib/libopenbabel.so.4.0.1". > Call Stack (most recent call first): > cmake_install.cmake:75 (INCLUDE) > > and > > CMake Error at src/formats/inchi103/cmake_install.cmake:48 (FILE): > file INSTALL cannot find > "<path>/openbabel-2.3.1/build/lib/libinchi.so.0.3.1". > Call Stack (most recent call first): > src/formats/cmake_install.cmake:2017 (INCLUDE) > src/cmake_install.cmake:173 (INCLUDE) > cmake_install.cmake:75 (INCLUDE) > > And if I check the library dir again, the both files are indeed not there > ALTHOUGH they were there before I started the install process. How can this > happen? > > I am not very familiar with CMake so can anyone help me fix this problem or > tell me how I can install the python-bindings in a different way on CentOS5? > > Thanks a lot for you help. > Cheers, > Charlotta > > > --- > Charlotta Schärfe > Eberhard Karls University Tübingen > Applied Bioinformatics Group > Phone: +49 (0)7071 29-70462 > schae...@informatik.uni-tuebingen.de > > > > > > > > ------------------------------------------------------------------------------ > LogMeIn Rescue: Anywhere, Anytime Remote support for IT. Free Trial > Remotely access PCs and mobile devices and provide instant support > Improve your efficiency, and focus on delivering more value-add services > Discover what IT Professionals Know. Rescue delivers > http://p.sf.net/sfu/logmein_12329d2d > _______________________________________________ > OpenBabel-discuss mailing list > OpenBabel-discuss@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/openbabel-discuss > ------------------------------------------------------------------------------ LogMeIn Rescue: Anywhere, Anytime Remote support for IT. Free Trial Remotely access PCs and mobile devices and provide instant support Improve your efficiency, and focus on delivering more value-add services Discover what IT Professionals Know. Rescue delivers http://p.sf.net/sfu/logmein_12329d2d _______________________________________________ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
